67 lines (66 with data), 4.0 kB

##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##FILTER=<ID=RefCall,Description="Genotyping model thinks this site is reference.">
##FILTER=<ID=LowQual,Description="Confidence in this variant being real is below calling threshold.">
##FILTER=<ID=NoCall,Description="Site has depth=0 resulting in no call.">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position (for use with symbolic alleles)">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block.">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele">
##FORMAT=<ID=VAF,Number=A,Type=Float,Description="Variant allele fractions.">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled genotype likelihoods rounded to the closest integer">
##FORMAT=<ID=MED_DP,Number=1,Type=Integer,Description="Median DP observed within the GVCF block rounded to the nearest integer.">
##DeepVariant_version=1.6.1
##contig=<ID=chr20,length=63025520>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA12878
chr20	10001019	.	T	G	0	.	.	GT:DP:AD:VAF	0/1:44:31,13:0.295455
chr20	10001298	.	T	A	0	.	.	GT:DP:AD:VAF	1/1:43:0,43:1
chr20	10001436	.	A	AAGGCT	0	.	.	GT:DP:AD:VAF	1/1:39:2,35:0.897436
chr20	10001474	.	C	T	0	.	.	GT:DP:AD:VAF	1/1:36:0,36:1
chr20	10001617	.	C	A	0	.	.	GT:DP:AD:VAF	0/1:43:23,20:0.465116
chr20	10001628	.	G	A	0	.	.	GT:DP:AD:VAF	1/1:44:0,44:1
chr20	10001661	.	T	C	0	.	.	GT:DP:AD:VAF	1/1:47:0,47:1
chr20	10001670	.	T	G	0	.	.	GT:DP:AD:VAF	1/1:46:0,46:1
chr20	10002058	.	T	G	0	.	.	GT:DP:AD:VAF	1/1:58:0,58:1
chr20	10002099	.	C	T	0	.	.	GT:DP:AD:VAF	0/1:57:27,30:0.526316
chr20	10002138	.	C	G	0	.	.	GT:DP:AD:VAF	1/1:47:0,47:1
chr20	10002142	.	G	C	0	.	.	GT:DP:AD:VAF	1/1:47:0,47:1
chr20	10002625	.	G	T	0	.	.	GT:DP:AD:VAF	1/1:55:0,55:1
chr20	10003021	.	C	T	0	.	.	GT:DP:AD:VAF	1/1:38:0,38:1
chr20	10003109	.	A	C	0	.	.	GT:DP:AD:VAF	0/0:32:28,4:0.125
chr20	10003358	.	A	C	0	.	.	GT:DP:AD:VAF	0/1:51:24,27:0.529412
chr20	10003651	.	T	C	0	.	.	GT:DP:AD:VAF	1/1:44:0,44:1
chr20	10003692	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:44:0,44:1
chr20	10003832	.	G	A	0	.	.	GT:DP:AD:VAF	1/1:37:0,37:1
chr20	10004094	.	A	C	0	.	.	GT:DP:AD:VAF	1/1:35:0,35:1
chr20	10004147	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:41:0,41:1
chr20	10004351	.	C	G	0	.	.	GT:DP:AD:VAF	1/1:50:0,50:1
chr20	10004389	.	T	G	0	.	.	GT:DP:AD:VAF	1/1:41:0,41:1
chr20	10004610	.	A	C	0	.	.	GT:DP:AD:VAF	1/1:51:0,51:1
chr20	10004725	.	A	G	0	.	.	GT:DP:AD:VAF	0/1:51:27,24:0.470588
chr20	10004769	.	TAAAACTATGC	T	0	.	.	GT:DP:AD:VAF	0/1:53:14,39:0.735849
chr20	10004874	.	A	C	0	.	.	GT:DP:AD:VAF	1/1:58:0,58:1
chr20	10004887	.	A	G	0	.	.	GT:DP:AD:VAF	0/1:57:30,27:0.473684
chr20	10005010	.	C	T	0	.	.	GT:DP:AD:VAF	1/1:54:0,54:1
chr20	10005427	.	C	T	0	.	.	GT:DP:AD:VAF	1/1:44:0,44:1
chr20	10005499	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:45:0,45:1
chr20	10005587	.	A	G	0	.	.	GT:DP:AD:VAF	0/1:61:31,30:0.491803
chr20	10005723	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:53:0,53:1
chr20	10006291	.	G	A	0	.	.	GT:DP:AD:VAF	0/1:55:29,26:0.472727
chr20	10006682	.	T	A	0	.	.	GT:DP:AD:VAF	1/1:47:0,47:1
chr20	10006819	.	AAAAC	A	0	.	.	GT:DP:AD:VAF	1/1:44:0,44:1
chr20	10007150	.	G	C	0	.	.	GT:DP:AD:VAF	0/1:46:29,17:0.369565
chr20	10007175	.	C	T	0	.	.	GT:DP:AD:VAF	0/1:45:22,23:0.511111
chr20	10007352	.	C	T	0	.	.	GT:DP:AD:VAF	1/1:45:0,45:1
chr20	10007531	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:51:0,51:1
chr20	10007980	.	A	C	0	.	.	GT:DP:AD:VAF	1/1:61:0,61:1
chr20	10008146	.	TA	T	0	.	.	GT:DP:AD:VAF	1/1:46:0,46:1
chr20	10008221	.	T	C	0	.	.	GT:DP:AD:VAF	1/1:51:0,51:1
chr20	10008458	.	T	G	0	.	.	GT:DP:AD:VAF	1/1:36:0,36:1
chr20	10009227	.	A	G	0	.	.	GT:DP:AD:VAF	0/1:66:34,32:0.484848
chr20	10009246	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:68:0,68:1
chr20	10009400	.	T	A	0	.	.	GT:DP:AD:VAF	1/1:70:0,70:1
chr20	10009512	.	C	G	0	.	.	GT:DP:AD:VAF	1/1:47:0,47:1
chr20	10009719	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:33:0,33:1