89 lines (88 with data), 7.0 kB

##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##FILTER=<ID=RefCall,Description="Genotyping model thinks this site is reference.">
##FILTER=<ID=LowQual,Description="Confidence in this variant being real is below calling threshold.">
##FILTER=<ID=NoCall,Description="Site has depth=0 resulting in no call.">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position (for use with symbolic alleles)">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block.">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele">
##FORMAT=<ID=VAF,Number=A,Type=Float,Description="Variant allele fractions.">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled genotype likelihoods rounded to the closest integer">
##FORMAT=<ID=MED_DP,Number=1,Type=Integer,Description="Median DP observed within the GVCF block rounded to the nearest integer.">
##DeepVariant_version=1.6.1
##contig=<ID=chr20,length=63025520>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA12878
chr20	10000117	.	C	T	36.9	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:34:55:25,30:0.545455:36,0,37
chr20	10000211	.	C	T	34.5	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:34:59:30,29:0.491525:34,0,51
chr20	10000439	.	T	G	39.9	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:39:72:0,72:1:39,45,0
chr20	10000598	.	T	A	62.2	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:54:46:0,46:1:62,55,0
chr20	10000694	.	G	A	35.1	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:35:48:26,22:0.458333:35,0,47
chr20	10000758	.	T	A	69.1	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:56:56:0,56:1:69,55,0
chr20	10001298	.	T	A	54.5	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:49:43:0,43:1:54,50,0
chr20	10001436	.	A	AAGGCT	38.7	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:38:39:2,35:0.897436:38,47,0
chr20	10001474	.	C	T	45.2	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:44:36:0,36:1:45,50,0
chr20	10001617	.	C	A	30.9	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:31:43:23,20:0.465116:30,0,57
chr20	10001628	.	G	A	60.1	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:59:44:0,44:1:60,64,0
chr20	10001661	.	T	C	59.5	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:58:47:0,47:1:59,63,0
chr20	10001670	.	T	G	50.6	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:47:46:0,46:1:50,50,0
chr20	10002058	.	T	G	48	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:44:58:0,58:1:48,45,0
chr20	10002099	.	C	T	36.6	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:36:57:27,30:0.526316:36,0,48
chr20	10002138	.	C	G	58.8	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:54:47:0,47:1:58,56,0
chr20	10002142	.	G	C	57.9	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:55:47:0,47:1:57,58,0
chr20	10002458	.	G	GTT,GTTT	23.7	PASS	.	GT:GQ:DP:AD:VAF:PL	1/2:5:53:3,27,15:0.509434,0.283019:22,20,4,20,0,14
chr20	10002470	.	C	T	21.3	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:21:42:0,42:1:21,32,0
chr20	10002625	.	G	T	61.7	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:58:55:0,55:1:61,59,0
chr20	10003021	.	C	T	47	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:45:38:0,38:1:47,49,0
chr20	10003358	.	A	C	42.4	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:42:51:24,27:0.529412:42,0,54
chr20	10003651	.	T	C	56.9	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:50:44:0,44:1:56,50,0
chr20	10003692	.	A	G	61.5	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:53:44:0,44:1:61,54,0
chr20	10003832	.	G	A	52	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:49:37:0,37:1:51,51,0
chr20	10004094	.	A	C	54.6	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:53:35:0,35:1:54,58,0
chr20	10004147	.	A	G	52.8	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:50:41:0,41:1:52,53,0
chr20	10004193	.	G	T	32.8	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:32:43:19,21:0.488372:32,0,38
chr20	10004222	.	C	CA	19.7	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:19:51:19,28:0.54902:19,0,30
chr20	10004223	.	A	AG	14.3	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:14:50:35,15:0.3:14,0,25
chr20	10004351	.	C	G	55	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:49:50:0,50:1:54,50,0
chr20	10004389	.	T	G	48.4	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:46:41:0,41:1:48,48,0
chr20	10004610	.	A	C	56.9	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:52:51:0,51:1:56,53,0
chr20	10004725	.	A	G	37.3	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:37:51:27,24:0.470588:37,0,45
chr20	10004769	.	TAAAACTATGC	T	32.7	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:32:53:14,39:0.735849:32,0,41
chr20	10004874	.	A	C	47.4	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:44:58:0,58:1:47,47,0
chr20	10004887	.	A	G	31.9	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:32:57:30,27:0.473684:31,0,43
chr20	10005010	.	C	T	63.7	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:55:54:0,54:1:63,55,0
chr20	10005427	.	C	T	57.2	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:50:44:0,44:1:57,51,0
chr20	10005499	.	A	G	58.6	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:53:45:0,45:1:58,54,0
chr20	10005587	.	A	G	43.8	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:43:61:31,30:0.491803:43,0,51
chr20	10005723	.	A	G	62.3	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:54:53:0,53:1:62,55,0
chr20	10006291	.	G	A	40.3	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:40:55:29,26:0.472727:40,0,51
chr20	10006404	.	A	C	65.5	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:58:50:0,50:1:65,58,0
chr20	10006682	.	T	A	55	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:49:47:0,47:1:54,50,0
chr20	10006819	.	AAAAC	A	42	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:39:44:0,44:1:42,42,0
chr20	10007150	.	G	C	37.7	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:38:46:29,17:0.369565:37,0,53
chr20	10007175	.	C	T	40.7	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:40:45:22,23:0.511111:40,0,47
chr20	10007352	.	C	T	61	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:53:45:0,45:1:61,54,0
chr20	10007531	.	A	G	57.2	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:52:51:0,51:1:57,53,0
chr20	10007980	.	A	C	57.2	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:51:61:0,61:1:57,52,0
chr20	10008029	.	T	TA	51.1	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:37:43:0,43:1:51,37,0
chr20	10008146	.	TA	T	40.1	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:40:46:0,46:1:40,48,0
chr20	10008221	.	T	C	63.5	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:58:51:0,51:1:63,60,0
chr20	10008458	.	T	G	57.6	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:49:36:0,36:1:57,49,0
chr20	10008742	.	G	T	29.5	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:24:31:13,16:0.516129:29,0,25
chr20	10008758	.	C	CA	31.7	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:20:31:4,19:0.612903:31,20,0
chr20	10008921	.	C	CA	20.2	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:20:29:17,8:0.275862:20,0,42
chr20	10008948	.	TA	T	37.1	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:27:40:0,40:1:37,27,0
chr20	10008952	.	CACACACACACA	C,CCACACACACA	41	PASS	.	GT:GQ:DP:AD:VAF:PL	1/2:15:42:1,15,25:0.357143,0.595238:40,28,49,28,0,15
chr20	10009227	.	A	G	45.8	PASS	.	GT:GQ:DP:AD:VAF:PL	0/1:44:66:34,32:0.484848:45,0,49
chr20	10009246	.	A	G	54.4	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:50:68:0,68:1:54,51,0
chr20	10009400	.	T	A	39.8	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:38:70:0,70:1:39,42,0
chr20	10009512	.	C	G	61.5	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:52:47:0,47:1:61,52,0
chr20	10009719	.	A	G	54	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:50:33:0,33:1:54,52,0
chr20	10009795	.	A	G	47.9	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:45:40:0,40:1:47,48,0
chr20	10009844	.	G	A	17.5	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:11:41:10,31:0.756098:17,12,0
chr20	10009871	.	A	G	22.9	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:14:47:9,38:0.808511:22,13,0
chr20	10009875	.	A	G	20.9	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:11:52:7,44:0.846154:20,10,0
chr20	10009879	.	A	G	26.7	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:23:48:0,47:0.979167:26,25,0
chr20	10009883	.	A	G	26.8	PASS	.	GT:GQ:DP:AD:VAF:PL	1/1:25:50:0,50:1:26,28,0