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##fileformat=VCFv4.2 ##FILTER=<ID=PASS,Description="All filters passed"> ##FILTER=<ID=RefCall,Description="Genotyping model thinks this site is reference."> ##FILTER=<ID=LowQual,Description="Confidence in this variant being real is below calling threshold."> ##FILTER=<ID=NoCall,Description="Site has depth=0 resulting in no call."> ##INFO=<ID=END,Number=1,Type=Integer,Description="End position (for use with symbolic alleles)"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth"> ##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block."> ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele"> ##FORMAT=<ID=VAF,Number=A,Type=Float,Description="Variant allele fractions."> ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled genotype likelihoods rounded to the closest integer"> ##FORMAT=<ID=MED_DP,Number=1,Type=Integer,Description="Median DP observed within the GVCF block rounded to the nearest integer."> ##DeepVariant_version=1.6.1 ##contig=<ID=chr20,length=63025520> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA12878 chr20 10000000 . T <*> 0 . END=10000116 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:45:58:0,135,1349 chr20 10000117 . C T,<*> 36.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:55:25,30,0:0.545455,0:36,0,37,990,990,990 chr20 10000118 . T <*> 0 . END=10000210 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:50:57:0,171,1709 chr20 10000211 . C T,<*> 34.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:34:59:30,29,0:0.491525,0:34,0,51,990,990,990 chr20 10000212 . A <*> 0 . END=10000438 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:50:57:0,174,1739 chr20 10000439 . T G,<*> 39.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:72:0,72,0:1,0:39,45,0,990,990,990 chr20 10000440 . T <*> 0 . END=10000597 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:42:47:0,225,2249 chr20 10000598 . T A,<*> 62.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:46:0,46,0:1,0:62,55,0,990,990,990 chr20 10000599 . T <*> 0 . END=10000693 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:44:49:0,135,1349 chr20 10000694 . G A,<*> 35.1 PASS . GT:GQ:DP:AD:VAF:PL 0/1:35:48:26,22,0:0.458333,0:35,0,47,990,990,990 chr20 10000695 . G <*> 0 . END=10000757 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:46:51:0,147,1469 chr20 10000758 . T A,<*> 69.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:56:0,56,0:1,0:69,55,0,990,990,990 chr20 10000759 . A <*> 0 . END=10000999 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:27:42:0,171,1709 chr20 10001000 . G <*> 0 . END=10001018 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:42:44:0,129,1289 chr20 10001019 . T G,<*> 2.4 RefCall . GT:GQ:DP:AD:VAF:PL ./.:4:44:31,13,0:0.295455,0:0,1,34,990,990,990 chr20 10001020 . C <*> 0 . END=10001080 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:24:41:0,129,1289 chr20 10001081 . T <*> 0 . END=10001081 GT:GQ:MIN_DP:MED_DP:PL 0/0:45:25:25:0,45,689 chr20 10001082 . A <*> 0 . END=10001297 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:25:32:0,81,809 chr20 10001298 . T A,<*> 54.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:43:0,43,0:1,0:54,50,0,990,990,990 chr20 10001299 . C <*> 0 . END=10001435 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:29:47:0,138,1379 chr20 10001436 . A AAGGCT,<*> 38.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:39:2,35,0:0.897436,0:38,47,0,990,990,990 chr20 10001437 . A <*> 0 . END=10001473 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:33:37:0,111,1109 chr20 10001474 . C T,<*> 45.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:36:0,36,0:1,0:45,50,0,990,990,990 chr20 10001475 . G <*> 0 . END=10001616 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:37:43:0,111,1109 chr20 10001617 . C A,<*> 30.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:43:23,20,0:0.465116,0:30,0,57,990,990,990 chr20 10001618 . T <*> 0 . END=10001627 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:40:42:0,123,1229 chr20 10001628 . G A,<*> 60.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:59:44:0,44,0:1,0:60,64,0,990,990,990 chr20 10001629 . G <*> 0 . END=10001660 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:38:42:0,129,1289 chr20 10001661 . T C,<*> 59.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:58:47:0,47,0:1,0:59,63,0,990,990,990 chr20 10001662 . T <*> 0 . END=10001669 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:47:47:0,147,1469 chr20 10001670 . T G,<*> 50.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:47:46:0,46,0:1,0:50,50,0,990,990,990 chr20 10001671 . G <*> 0 . END=10001999 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:34:43:0,138,1379 chr20 10002000 . T <*> 0 . END=10002057 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:45:58:0,138,1379 chr20 10002058 . T G,<*> 48 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:58:0,58,0:1,0:48,45,0,990,990,990 chr20 10002059 . A <*> 0 . END=10002098 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:58:62:0,177,1769 chr20 10002099 . C T,<*> 36.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:36:57:27,30,0:0.526316,0:36,0,48,990,990,990 chr20 10002100 . T <*> 0 . END=10002137 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:45:52:0,174,1739 chr20 10002138 . C G,<*> 58.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:47:0,47,0:1,0:58,56,0,990,990,990 chr20 10002139 . A <*> 0 . END=10002141 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:45:46:0,138,1379 chr20 10002142 . G C,<*> 57.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:47:0,47,0:1,0:57,58,0,990,990,990 chr20 10002143 . T <*> 0 . END=10002457 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:36:58:0,144,1439 chr20 10002458 . G GTT,GTTT,<*> 23.7 PASS . GT:GQ:DP:AD:VAF:PL 1/2:5:53:3,27,15,0:0.509434,0.283019,0:22,20,4,20,0,14,990,990,990,990 chr20 10002459 . T <*> 0 . END=10002469 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:46:50:0,150,1499 chr20 10002470 . C T,<*> 21.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:21:42:0,42,0:1,0:21,32,0,990,990,990 chr20 10002471 . T <*> 0 . END=10002481 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:29:43:0,129,1289 chr20 10002482 . G <*> 0 . END=10002482 GT:GQ:MIN_DP:MED_DP:PL 0/0:18:36:36:0,18,899 chr20 10002483 . A <*> 0 . END=10002483 GT:GQ:MIN_DP:MED_DP:PL 0/0:27:29:29:0,27,749 chr20 10002484 . T <*> 0 . END=10002492 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:34:47:0,72,959 chr20 10002493 . A C,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:55:37:32,5,0:0.135135,0:0,59,56,990,990,990 chr20 10002494 . C <*> 0 . END=10002497 GT:GQ:MIN_DP:MED_DP:PL 0/0:48:36:43:0,132,1319 chr20 10002498 . G <*> 0 . END=10002498 GT:GQ:MIN_DP:MED_DP:PL 0/0:21:37:37:0,21,929 chr20 10002499 . T <*> 0 . END=10002504 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:42:46:0,150,1499 chr20 10002505 . A <*> 0 . END=10002505 GT:GQ:MIN_DP:MED_DP:PL 0/0:39:43:43:0,39,1109 chr20 10002506 . T <*> 0 . END=10002536 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:39:49:0,129,1289 chr20 10002537 . T <*> 0 . END=10002537 GT:GQ:MIN_DP:MED_DP:PL 0/0:36:52:52:0,36,1319 chr20 10002538 . C <*> 0 . END=10002624 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:44:52:0,171,1709 chr20 10002625 . G T,<*> 61.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:58:55:0,55,0:1,0:61,59,0,990,990,990 chr20 10002626 . G <*> 0 . END=10002999 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:37:50:0,162,1619 chr20 10003000 . A <*> 0 . END=10003020 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:37:42:0,141,1409 chr20 10003021 . C T,<*> 47 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:38:0,38,0:1,0:47,49,0,990,990,990 chr20 10003022 . G <*> 0 . END=10003108 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:27:35:0,114,1139 chr20 10003109 . A C,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:60:32:28,4,0:0.125,0:0,60,67,990,990,990 chr20 10003110 . C <*> 0 . END=10003357 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:34:48:0,123,1229 chr20 10003358 . A C,<*> 42.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:42:51:24,27,0:0.529412,0:42,0,54,990,990,990 chr20 10003359 . C <*> 0 . END=10003650 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:31:38:0,141,1409 chr20 10003651 . T C,<*> 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:44:0,44,0:1,0:56,50,0,990,990,990 chr20 10003652 . C <*> 0 . END=10003691 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:42:44:0,132,1319 chr20 10003692 . A G,<*> 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:44:0,44,0:1,0:61,54,0,990,990,990 chr20 10003693 . T <*> 0 . END=10003831 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:35:42:0,126,1259 chr20 10003832 . G A,<*> 52 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:37:0,37,0:1,0:51,51,0,990,990,990 chr20 10003833 . T <*> 0 . END=10003999 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:38:45:0,117,1169 chr20 10004000 . G <*> 0 . END=10004093 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:35:41:0,141,1409 chr20 10004094 . A C,<*> 54.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:35:0,35,0:1,0:54,58,0,990,990,990 chr20 10004095 . C <*> 0 . END=10004146 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:29:37:0,105,1049 chr20 10004147 . A G,<*> 52.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:41:0,41,0:1,0:52,53,0,990,990,990 chr20 10004148 . G <*> 0 . END=10004152 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:41:42:0,129,1289 chr20 10004153 . C <*> 0 . END=10004153 GT:GQ:MIN_DP:MED_DP:PL 0/0:33:41:41:0,33,1049 chr20 10004154 . G <*> 0 . END=10004181 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:36:39:0,141,1409 chr20 10004182 . A <*> 0 . END=10004182 GT:GQ:MIN_DP:MED_DP:PL 0/0:33:41:41:0,33,1049 chr20 10004183 . C <*> 0 . END=10004186 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:38:40:0,126,1259 chr20 10004187 . A <*> 0 . END=10004187 GT:GQ:MIN_DP:MED_DP:PL ./.:1:39:39:2,0,932 chr20 10004188 . C <*> 0 . END=10004188 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:44:44:0,132,1319 chr20 10004189 . T <*> 0 . END=10004189 GT:GQ:MIN_DP:MED_DP:PL ./.:0:44:44:47,0,1007 chr20 10004190 . C <*> 0 . END=10004192 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:42:50:0,153,1529 chr20 10004193 . G T,<*> 32.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:43:19,21,0:0.488372,0:32,0,38,990,990,990 chr20 10004194 . C <*> 0 . END=10004207 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:40:47:0,147,1469 chr20 10004208 . T <*> 0 . END=10004208 GT:GQ:MIN_DP:MED_DP:PL 0/0:36:42:42:0,36,1079 chr20 10004209 . G <*> 0 . END=10004214 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:40:46:0,144,1439 chr20 10004215 . C <*> 0 . END=10004215 GT:GQ:MIN_DP:MED_DP:PL 0/0:30:40:40:0,30,1019 chr20 10004216 . T <*> 0 . END=10004216 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:51:51:0,123,1469 chr20 10004217 . G <*> 0 . END=10004217 GT:GQ:MIN_DP:MED_DP:PL 0/0:30:40:40:0,30,1019 chr20 10004218 . T <*> 0 . END=10004221 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:35:42:0,141,1409 chr20 10004222 . C CA,<*> 19.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:19:51:19,28,0:0.54902,0:19,0,30,990,990,990 chr20 10004223 . A AG,<*> 14.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:14:50:35,15,0:0.3,0:14,0,25,990,990,990 chr20 10004224 . A <*> 0 . END=10004252 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:42:55:0,138,1619 chr20 10004253 . A T,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:56:55:48,7,0:0.127273,0:0,61,57,990,990,990 chr20 10004254 . T <*> 0 . END=10004255 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:66:67:0,198,1979 chr20 10004256 . A <*> 0 . END=10004256 GT:GQ:MIN_DP:MED_DP:PL ./.:1:58:58:5,0,1385 chr20 10004257 . T <*> 0 . END=10004350 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:47:54:0,201,2009 chr20 10004351 . C G,<*> 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:50:0,50,0:1,0:54,50,0,990,990,990 chr20 10004352 . A <*> 0 . END=10004388 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:39:43:0,147,1469 chr20 10004389 . T G,<*> 48.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:41:0,41,0:1,0:48,48,0,990,990,990 chr20 10004390 . G <*> 0 . END=10004609 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:40:52:0,126,1259 chr20 10004610 . A C,<*> 56.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:51:0,51,0:1,0:56,53,0,990,990,990 chr20 10004611 . C <*> 0 . END=10004724 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:44:50:0,156,1559 chr20 10004725 . A G,<*> 37.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:37:51:27,24,0:0.470588,0:37,0,45,990,990,990 chr20 10004726 . T <*> 0 . END=10004768 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:49:51:0,150,1499 chr20 10004769 . TAAAACTATGC T,<*> 32.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:53:14,39,0:0.735849,0:32,0,41,990,990,990 chr20 10004780 . A <*> 0 . END=10004873 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:53:62:0,162,1619 chr20 10004874 . A C,<*> 47.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:58:0,58,0:1,0:47,47,0,990,990,990 chr20 10004875 . T <*> 0 . END=10004886 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:57:59:0,177,1769 chr20 10004887 . A G,<*> 31.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:32:57:30,27,0:0.473684,0:31,0,43,990,990,990 chr20 10004888 . A <*> 0 . END=10004999 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:34:46:0,174,1739 chr20 10005000 . G <*> 0 . END=10005009 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:56:57:0,168,1679 chr20 10005010 . C T,<*> 63.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:54:0,54,0:1,0:63,55,0,990,990,990 chr20 10005011 . G <*> 0 . END=10005426 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:43:52:0,168,1679 chr20 10005427 . C T,<*> 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:44:0,44,0:1,0:57,51,0,990,990,990 chr20 10005428 . A <*> 0 . END=10005498 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:31:37:0,132,1319 chr20 10005499 . A G,<*> 58.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:45:0,45,0:1,0:58,54,0,990,990,990 chr20 10005500 . T <*> 0 . END=10005586 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:45:54:0,141,1409 chr20 10005587 . A G,<*> 43.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:43:61:31,30,0:0.491803,0:43,0,51,990,990,990 chr20 10005588 . A <*> 0 . END=10005722 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:48:52:0,180,1799 chr20 10005723 . A G,<*> 62.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:53:0,53,0:1,0:62,55,0,990,990,990 chr20 10005724 . A <*> 0 . END=10005999 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:46:56:0,159,1589 chr20 10006000 . G <*> 0 . END=10006290 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:47:57:0,186,1859 chr20 10006291 . G A,<*> 40.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:55:29,26,0:0.472727,0:40,0,51,990,990,990 chr20 10006292 . A <*> 0 . END=10006403 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:48:54:0,168,1679 chr20 10006404 . A C,<*> 65.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:58:50:0,50,0:1,0:65,58,0,990,990,990 chr20 10006405 . C <*> 0 . END=10006681 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:42:48:0,150,1499 chr20 10006682 . T A,<*> 55 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:47:0,47,0:1,0:54,50,0,990,990,990 chr20 10006683 . A <*> 0 . END=10006818 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:39:47:0,138,1379 chr20 10006819 . AAAAC A,<*> 42 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:44:0,44,0:1,0:42,42,0,990,990,990 chr20 10006824 . A <*> 0 . END=10006999 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:35:49:0,135,1349 chr20 10007000 . T <*> 0 . END=10007149 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:43:51:0,165,1649 chr20 10007150 . G C,<*> 37.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:38:46:29,17,0:0.369565,0:37,0,53,990,990,990 chr20 10007151 . G <*> 0 . END=10007174 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:43:46:0,144,1439 chr20 10007175 . C T,<*> 40.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:40:45:22,23,0:0.511111,0:40,0,47,990,990,990 chr20 10007176 . T <*> 0 . END=10007351 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:38:45:0,135,1349 chr20 10007352 . C T,<*> 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:45:0,45,0:1,0:61,54,0,990,990,990 chr20 10007353 . A <*> 0 . END=10007530 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:42:51:0,135,1349 chr20 10007531 . A G,<*> 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:51:0,51,0:1,0:57,53,0,990,990,990 chr20 10007532 . G <*> 0 . END=10007979 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:30:46:0,147,1469 chr20 10007980 . A C,<*> 57.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:61:0,61,0:1,0:57,52,0,990,990,990 chr20 10007981 . A <*> 0 . END=10007999 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:56:61:0,180,1799 chr20 10008000 . G <*> 0 . END=10008028 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:43:51:0,174,1739 chr20 10008029 . T TA,<*> 51.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:37:43:0,43,0:1,0:51,37,0,990,990,990 chr20 10008030 . A <*> 0 . END=10008145 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:30:42:0,126,1259 chr20 10008146 . TA T,<*> 40.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:46:0,46,0:1,0:40,48,0,990,990,990 chr20 10008148 . A <*> 0 . END=10008220 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:44:49:0,141,1409 chr20 10008221 . T C,<*> 63.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:58:51:0,51,0:1,0:63,60,0,990,990,990 chr20 10008222 . T <*> 0 . END=10008457 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:33:47:0,156,1559 chr20 10008458 . T G,<*> 57.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:36:0,36,0:1,0:57,49,0,990,990,990 chr20 10008459 . A <*> 0 . END=10008675 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:25:48:0,111,1109 chr20 10008676 . A <*> 0 . END=10008676 GT:GQ:MIN_DP:MED_DP:PL 0/0:42:24:24:0,42,659 chr20 10008677 . G <*> 0 . END=10008681 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:22:24:0,75,749 chr20 10008682 . A <*> 0 . END=10008682 GT:GQ:MIN_DP:MED_DP:PL 0/0:39:23:23:0,39,629 chr20 10008683 . G <*> 0 . END=10008688 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:20:22:0,63,629 chr20 10008689 . T <*> 0 . END=10008689 GT:GQ:MIN_DP:MED_DP:PL 0/0:36:22:22:0,36,599 chr20 10008690 . G <*> 0 . END=10008691 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:24:25:0,78,779 chr20 10008692 . A <*> 0 . END=10008692 GT:GQ:MIN_DP:MED_DP:PL 0/0:36:22:22:0,36,599 chr20 10008693 . T <*> 0 . END=10008697 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:20:20:0,60,599 chr20 10008698 . A <*> 0 . END=10008698 GT:GQ:MIN_DP:MED_DP:PL 0/0:33:21:21:0,33,569 chr20 10008699 . G <*> 0 . END=10008705 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:19:20:0,75,749 chr20 10008706 . A <*> 0 . END=10008706 GT:GQ:MIN_DP:MED_DP:PL 0/0:27:19:19:0,27,509 chr20 10008707 . G <*> 0 . END=10008708 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:19:19:0,57,569 chr20 10008709 . T <*> 0 . END=10008709 GT:GQ:MIN_DP:MED_DP:PL 0/0:30:20:20:0,30,539 chr20 10008710 . C <*> 0 . END=10008710 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:22:22:0,66,659 chr20 10008711 . G <*> 0 . END=10008711 GT:GQ:MIN_DP:MED_DP:PL 0/0:7:22:22:0,6,539 chr20 10008712 . A <*> 0 . END=10008716 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:23:26:0,78,779 chr20 10008717 . AT A,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:50:25:23,2,0:0.08,0:0,50,58,990,990,990 chr20 10008719 . C <*> 0 . END=10008723 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:21:28:0,63,629 chr20 10008724 . C <*> 0 . END=10008724 GT:GQ:MIN_DP:MED_DP:PL 0/0:18:26:26:0,18,659 chr20 10008725 . T <*> 0 . END=10008729 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:24:29:0,75,749 chr20 10008730 . C <*> 0 . END=10008730 GT:GQ:MIN_DP:MED_DP:PL 0/0:45:25:25:0,45,689 chr20 10008731 . A <*> 0 . END=10008732 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:27:28:0,87,869 chr20 10008733 . T <*> 0 . END=10008733 GT:GQ:MIN_DP:MED_DP:PL 0/0:9:23:23:0,9,569 chr20 10008734 . G <*> 0 . END=10008734 GT:GQ:MIN_DP:MED_DP:PL 0/0:18:26:26:0,18,659 chr20 10008735 . A <*> 0 . END=10008741 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:26:31:0,93,929 chr20 10008742 . G T,<*> 29.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:24:31:13,16,0:0.516129,0:29,0,25,990,990,990 chr20 10008743 . T <*> 0 . END=10008749 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:21:24:0,87,869 chr20 10008750 . T TAA,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:36:27:21,2,0:0.0740741,0:0,35,51,990,990,990 chr20 10008751 . A <*> 0 . END=10008755 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:29:32:0,102,1019 chr20 10008756 . T <*> 0 . END=10008756 GT:GQ:MIN_DP:MED_DP:PL 0/0:3:20:20:0,0,479 chr20 10008757 . A <*> 0 . END=10008757 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:28:28:0,84,839 chr20 10008758 . C CA,<*> 31.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:20:31:4,19,0:0.612903,0:31,20,0,990,990,990 chr20 10008759 . A <*> 0 . END=10008878 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:32:38:0,96,959 chr20 10008879 . A <*> 0 . END=10008879 GT:GQ:MIN_DP:MED_DP:PL 0/0:4:31:31:0,3,749 chr20 10008880 . C <*> 0 . END=10008913 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:25:30:0,99,989 chr20 10008914 . A <*> 0 . END=10008914 GT:GQ:MIN_DP:MED_DP:PL 0/0:15:25:25:0,15,629 chr20 10008915 . C <*> 0 . END=10008920 GT:GQ:MIN_DP:MED_DP:PL 0/0:48:26:29:0,99,989 chr20 10008921 . C CA,<*> 20.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:20:29:17,8,0:0.275862,0:20,0,42,990,990,990 chr20 10008922 . A <*> 0 . END=10008947 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:30:37:0,102,1019 chr20 10008948 . TA T,<*> 37.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:27:40:0,40,0:1,0:37,27,0,990,990,990 chr20 10008950 . A <*> 0 . END=10008951 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:35:35:0,108,1079 chr20 10008952 . CACACACACACA C,CCACACACACA,<*> 41 PASS . GT:GQ:DP:AD:VAF:PL 1/2:15:42:1,15,25,0:0.357143,0.595238,0:40,28,49,28,0,15,990,990,990,990 chr20 10008964 . C <*> 0 . END=10008999 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:23:42:0,69,689 chr20 10009000 . T <*> 0 . END=10009226 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:45:53:0,144,1439 chr20 10009227 . A G,<*> 45.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:44:66:34,32,0:0.484848,0:45,0,49,990,990,990 chr20 10009228 . G <*> 0 . END=10009245 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:67:68:0,201,2009 chr20 10009246 . A G,<*> 54.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:68:0,68,0:1,0:54,51,0,990,990,990 chr20 10009247 . A <*> 0 . END=10009399 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:58:67:0,201,2009 chr20 10009400 . T A,<*> 39.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:70:0,70,0:1,0:39,42,0,990,990,990 chr20 10009401 . A <*> 0 . END=10009511 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:44:51:0,213,2129 chr20 10009512 . C G,<*> 61.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:52:47:0,47,0:1,0:61,52,0,990,990,990 chr20 10009513 . A <*> 0 . END=10009718 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:33:48:0,144,1439 chr20 10009719 . A G,<*> 54 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:33:0,33,0:1,0:54,52,0,990,990,990 chr20 10009720 . T <*> 0 . END=10009794 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:35:39:0,108,1079 chr20 10009795 . A G,<*> 47.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:40:0,40,0:1,0:47,48,0,990,990,990 chr20 10009796 . C <*> 0 . END=10009839 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:38:41:0,120,1199 chr20 10009840 . A <*> 0 . END=10009840 GT:GQ:MIN_DP:MED_DP:PL ./.:1:38:38:5,0,905 chr20 10009841 . A <*> 0 . END=10009843 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:38:39:0,117,1169 chr20 10009844 . G A,<*> 17.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:41:10,31,0:0.756098,0:17,12,0,990,990,990 chr20 10009845 . A <*> 0 . END=10009870 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:41:44:0,126,1259 chr20 10009871 . A G,<*> 22.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:14:47:9,38,0:0.808511,0:22,13,0,990,990,990 chr20 10009872 . G <*> 0 . END=10009874 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:39:50:0,150,1499 chr20 10009875 . A G,<*> 20.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:11:52:7,44,0:0.846154,0:20,10,0,990,990,990 chr20 10009876 . G <*> 0 . END=10009876 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:51:51:0,153,1529 chr20 10009877 . A G,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:23:38:33,5,0:0.131579,0:0,23,37,990,990,990 chr20 10009878 . G <*> 0 . END=10009878 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:50:50:0,150,1499 chr20 10009879 . A G,<*> 26.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:23:48:0,47,0:0.979167,0:26,25,0,990,990,990 chr20 10009880 . G <*> 0 . END=10009880 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:51:51:0,153,1529 chr20 10009881 . A <*> 0 . END=10009881 GT:GQ:MIN_DP:MED_DP:PL 0/0:27:39:39:0,27,989 chr20 10009882 . G <*> 0 . END=10009882 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:51:51:0,153,1529 chr20 10009883 . A G,<*> 26.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:25:50:0,50,0:1,0:26,28,0,990,990,990 chr20 10009884 . G <*> 0 . END=10009999 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:34:47:0,87,1349 chr20 10010000 . C <*> 0 . END=10010000 GT:GQ:MIN_DP:MED_DP:PL 0/0:50:61:61:0,183,1829