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Catherine Stones
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deepvariant-r1.6.1
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File Size Commit Date
 cohort_best_practice Initial commit 2024-08-08
 environment_tests Initial commit 2024-08-08
 labeler Initial commit 2024-08-08
 multiallelic_model Initial commit 2024-08-08
 protos Initial commit 2024-08-08
 python Initial commit 2024-08-08
 realigner Initial commit 2024-08-08
 testdata Initial commit 2024-08-08
 vendor Initial commit 2024-08-08
 BUILD 46.2 kB Initial commit 2024-08-08
 allele_frequency.py 15.2 kB Initial commit 2024-08-08
 allele_frequency_test.py 18.3 kB Initial commit 2024-08-08
 allelecounter.cc 37.6 kB Initial commit 2024-08-08
 allelecounter.h 21.5 kB Initial commit 2024-08-08
 allelecounter_test.cc 62.9 kB Initial commit 2024-08-08
 average_model_checkpoint_patched.py 4.1 kB Initial commit 2024-08-08
 call_variants.py 26.8 kB Initial commit 2024-08-08
 call_variants_accelerator_test.py 2.4 kB Initial commit 2024-08-08
 call_variants_slim.py 19.9 kB Initial commit 2024-08-08
 call_variants_slim_test.py 20.3 kB Initial commit 2024-08-08
 call_variants_test.py 7.0 kB Initial commit 2024-08-08
 convert_to_saved_model.py 4.5 kB Initial commit 2024-08-08
 dashboard_utils.py 6.1 kB Initial commit 2024-08-08
 dashboard_utils_test.py 3.5 kB Initial commit 2024-08-08
 data_providers.py 23.7 kB Initial commit 2024-08-08
 data_providers_test.py 24.5 kB Initial commit 2024-08-08
 direct_phasing.cc 26.1 kB Initial commit 2024-08-08
 direct_phasing.h 13.0 kB Initial commit 2024-08-08
 direct_phasing_test.cc 36.1 kB Initial commit 2024-08-08
 dv_config.py 4.2 kB Initial commit 2024-08-08
 dv_constants.py 3.2 kB Initial commit 2024-08-08
 dv_utils.py 14.0 kB Initial commit 2024-08-08
 dv_utils_test.py 8.4 kB Initial commit 2024-08-08
 dv_utils_using_clif.py 5.4 kB Initial commit 2024-08-08
 dv_utils_using_clif_test.py 5.1 kB Initial commit 2024-08-08
 dv_vcf_constants.py 5.3 kB Initial commit 2024-08-08
 dv_vcf_constants_test.py 2.7 kB Initial commit 2024-08-08
 exclude_contigs.py 105.9 kB Initial commit 2024-08-08
 exclude_contigs_test.py 2.2 kB Initial commit 2024-08-08
 haplotypes.py 21.1 kB Initial commit 2024-08-08
 haplotypes_test.py 25.8 kB Initial commit 2024-08-08
 keras_modeling.py 18.4 kB Initial commit 2024-08-08
 keras_modeling_test.py 8.5 kB Initial commit 2024-08-08
 logging_level.py 2.3 kB Initial commit 2024-08-08
 make_examples.py 8.1 kB Initial commit 2024-08-08
 make_examples_core.py 108.5 kB Initial commit 2024-08-08
 make_examples_core_test.py 58.0 kB Initial commit 2024-08-08
 make_examples_options.py 32.7 kB Initial commit 2024-08-08
 make_examples_somatic.py 10.3 kB Initial commit 2024-08-08
 make_examples_somatic_test.py 4.0 kB Initial commit 2024-08-08
 make_examples_test.py 52.6 kB Initial commit 2024-08-08
 merge_phased_reads.cc 10.8 kB Initial commit 2024-08-08
 merge_phased_reads.h 6.0 kB Initial commit 2024-08-08
 merge_phased_reads_main.cc 2.7 kB Initial commit 2024-08-08
 merge_phased_reads_test.cc 11.2 kB Initial commit 2024-08-08
 modeling.py 61.0 kB Initial commit 2024-08-08
 modeling_test.py 13.3 kB Initial commit 2024-08-08
 multisample_make_examples.py 9.6 kB Initial commit 2024-08-08
 pileup_channel_lib.h 30.4 kB Initial commit 2024-08-08
 pileup_channel_lib_test.cc 20.2 kB Initial commit 2024-08-08
 pileup_image.py 23.4 kB Initial commit 2024-08-08
 pileup_image_native.cc 20.7 kB Initial commit 2024-08-08
 pileup_image_native.h 5.6 kB Initial commit 2024-08-08
 pileup_image_test.py 64.6 kB Initial commit 2024-08-08
 postprocess_variants.cc 5.6 kB Initial commit 2024-08-08
 postprocess_variants.h 2.5 kB Initial commit 2024-08-08
 postprocess_variants.py 49.7 kB Initial commit 2024-08-08
 postprocess_variants_test.cc 5.2 kB Initial commit 2024-08-08
 postprocess_variants_test.py 61.5 kB Initial commit 2024-08-08
 resources.py 5.7 kB Initial commit 2024-08-08
 resources_test.py 6.7 kB Initial commit 2024-08-08
 runtime_by_region_vis.py 19.5 kB Initial commit 2024-08-08
 runtime_by_region_vis_test.py 7.3 kB Initial commit 2024-08-08
 sample.py 3.1 kB Initial commit 2024-08-08
 show_examples.py 18.9 kB Initial commit 2024-08-08
 show_examples_test.py 9.4 kB Initial commit 2024-08-08
 testdata.py 12.1 kB Initial commit 2024-08-08
 train.py 17.5 kB Initial commit 2024-08-08
 train_inceptionv3.py 21.6 kB Initial commit 2024-08-08
 utils.cc 2.9 kB Initial commit 2024-08-08
 utils.h 2.4 kB Initial commit 2024-08-08
 utils_test.cc 2.7 kB Initial commit 2024-08-08
 variant_caller.py 17.3 kB Initial commit 2024-08-08
 variant_caller_test.py 22.4 kB Initial commit 2024-08-08
 variant_caller_trio_test.py 21.4 kB Initial commit 2024-08-08
 variant_calling.cc 26.2 kB Initial commit 2024-08-08
 variant_calling.h 10.1 kB Initial commit 2024-08-08
 variant_calling_multisample.cc 27.6 kB Initial commit 2024-08-08
 variant_calling_multisample.h 10.9 kB Initial commit 2024-08-08
 variant_calling_multisample_somatic_test.cc 7.9 kB Initial commit 2024-08-08
 variant_calling_multisample_trio_test.cc 43.5 kB Initial commit 2024-08-08
 variant_calling_test.cc 50.3 kB Initial commit 2024-08-08
 vcf_candidate_importer.py 2.9 kB Initial commit 2024-08-08
 vcf_candidate_importer_test.py 6.0 kB Initial commit 2024-08-08
 vcf_stats.py 12.3 kB Initial commit 2024-08-08
 vcf_stats_report.py 3.7 kB Initial commit 2024-08-08
 vcf_stats_test.py 15.6 kB Initial commit 2024-08-08
 vcf_stats_vis.py 17.4 kB Initial commit 2024-08-08
 vcf_stats_vis_test.py 8.4 kB Initial commit 2024-08-08
 very_sensitive_caller.py 2.9 kB Initial commit 2024-08-08
 very_sensitive_caller_test.py 4.8 kB Initial commit 2024-08-08
 very_sensitive_caller_trio_test.py 4.8 kB Initial commit 2024-08-08