68 lines (67 with data), 4.0 kB

##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##FILTER=<ID=RefCall,Description="Genotyping model thinks this site is reference.">
##FILTER=<ID=LowQual,Description="Confidence in this variant being real is below calling threshold.">
##FILTER=<ID=NoCall,Description="Site has depth=0 resulting in no call.">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position (for use with symbolic alleles)">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth">
##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block.">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele">
##FORMAT=<ID=VAF,Number=A,Type=Float,Description="Variant allele fractions.">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled genotype likelihoods rounded to the closest integer">
##FORMAT=<ID=MED_DP,Number=1,Type=Integer,Description="Median DP observed within the GVCF block rounded to the nearest integer.">
##DeepVariant_version=1.6.0
##contig=<ID=20,length=63025520>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	child
20	10001019	.	T	G	0	.	.	GT:DP:AD:VAF	0/1:16:10,6:0.375
20	10001298	.	T	A	0	.	.	GT:DP:AD:VAF	1/1:23:0,23:1
20	10001436	.	A	AAGGCT	0	.	.	GT:DP:AD:VAF	1/1:25:0,23:0.92
20	10001474	.	C	T	0	.	.	GT:DP:AD:VAF	1/1:22:0,22:1
20	10001617	.	C	A	0	.	.	GT:DP:AD:VAF	0/1:18:11,7:0.388889
20	10001628	.	G	A	0	.	.	GT:DP:AD:VAF	1/1:20:0,20:1
20	10001661	.	T	C	0	.	.	GT:DP:AD:VAF	1/1:16:0,16:1
20	10001670	.	T	G	0	.	.	GT:DP:AD:VAF	1/1:18:0,18:1
20	10002058	.	T	G	0	.	.	GT:DP:AD:VAF	1/1:18:0,18:1
20	10002099	.	C	T	0	.	.	GT:DP:AD:VAF	0/1:17:6,11:0.647059
20	10002138	.	C	G	0	.	.	GT:DP:AD:VAF	1/1:15:0,15:1
20	10002142	.	G	C	0	.	.	GT:DP:AD:VAF	1/1:15:0,13:0.866667
20	10002625	.	G	T	0	.	.	GT:DP:AD:VAF	1/1:22:0,22:1
20	10003021	.	C	T	0	.	.	GT:DP:AD:VAF	1/1:17:0,17:1
20	10003358	.	A	C	0	.	.	GT:DP:AD:VAF	0/1:16:12,4:0.25
20	10003651	.	T	C	0	.	.	GT:DP:AD:VAF	1/1:16:0,16:1
20	10003692	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:13:0,13:1
20	10003832	.	G	A	0	.	.	GT:DP:AD:VAF	1/1:27:0,27:1
20	10004094	.	A	C	0	.	.	GT:DP:AD:VAF	1/1:13:0,13:1
20	10004114	.	C	G	0	.	.	GT:DP:AD:VAF	0/0:15:13,2:0.133333
20	10004128	.	AG	A	0	.	.	GT:DP:AD:VAF	0/0:18:15,2:0.111111
20	10004147	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:15:0,15:1
20	10004351	.	C	G	0	.	.	GT:DP:AD:VAF	1/1:20:0,20:1
20	10004389	.	T	G	0	.	.	GT:DP:AD:VAF	1/1:22:0,22:1
20	10004610	.	A	C	0	.	.	GT:DP:AD:VAF	1/1:18:0,18:1
20	10004725	.	A	G	0	.	.	GT:DP:AD:VAF	0/1:21:7,14:0.666667
20	10004769	.	TAAAACTATGC	T	0	.	.	GT:DP:AD:VAF	0/1:22:8,14:0.636364
20	10004874	.	A	C	0	.	.	GT:DP:AD:VAF	1/1:32:0,32:1
20	10004887	.	A	G	0	.	.	GT:DP:AD:VAF	0/1:30:16,14:0.466667
20	10005010	.	C	T	0	.	.	GT:DP:AD:VAF	1/1:25:0,25:1
20	10005427	.	C	T	0	.	.	GT:DP:AD:VAF	1/1:20:0,20:1
20	10005499	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:25:0,25:1
20	10005587	.	A	G	0	.	.	GT:DP:AD:VAF	0/1:34:20,14:0.411765
20	10005723	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:32:0,32:1
20	10006291	.	G	A	0	.	.	GT:DP:AD:VAF	0/1:29:17,12:0.413793
20	10006682	.	T	A	0	.	.	GT:DP:AD:VAF	1/1:23:0,23:1
20	10006819	.	AAAAC	A	0	.	.	GT:DP:AD:VAF	1/1:25:0,25:1
20	10007150	.	G	C	0	.	.	GT:DP:AD:VAF	0/1:32:13,19:0.59375
20	10007175	.	C	T	0	.	.	GT:DP:AD:VAF	0/1:33:17,16:0.484848
20	10007352	.	C	T	0	.	.	GT:DP:AD:VAF	1/1:26:0,26:1
20	10007531	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:21:0,21:1
20	10007980	.	A	C	0	.	.	GT:DP:AD:VAF	1/1:21:1,20:0.952381
20	10008146	.	TA	T	0	.	.	GT:DP:AD:VAF	1/1:29:1,27:0.931035
20	10008221	.	T	C	0	.	.	GT:DP:AD:VAF	1/1:24:1,23:0.958333
20	10008458	.	T	G	0	.	.	GT:DP:AD:VAF	1/1:26:0,26:1
20	10009227	.	A	G	0	.	.	GT:DP:AD:VAF	0/1:31:14,17:0.548387
20	10009246	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:35:0,35:1
20	10009400	.	T	A	0	.	.	GT:DP:AD:VAF	1/1:33:0,32:0.969697
20	10009512	.	C	G	0	.	.	GT:DP:AD:VAF	1/1:26:0,26:1
20	10009719	.	A	G	0	.	.	GT:DP:AD:VAF	1/1:19:0,18:0.947368