LymphomaFLserial / Git / Commit [4ff317]

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LymphomaFLserial

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Commit [4ff317] main

Initial commit

Authored by: WandaB 2025-04-21

Browse code at this revision

Parent: [f135fd]

1 2 3 > >> (Page 1 of 3)

added	.DS_Store
added	.gitignore
added	EarlyStableCN/determine_allCNbreaks.R
added	EarlyStableCN/find_earlystable.R
added	FL_integration/CibersortX/1_cibersort.sh
added	FL_integration/CibersortX/2_Omit_NA_ribosomal_proteins_zerovariancegenes.R
added	FL_integration/CibersortX/3_PlottingLM4_FL_Normal_Protein_coding1_Cell_fractions_cibersortx.ipynb
added	FL_integration/CibersortX/4_LM4_Tumor_purity_correlation_fl_normal.ipynb
added	FL_integration/CibersortX/merged_classes_LM4.txt
added	FL_integration/Mutationaldata/Metadata_Mutation_matrix.Rmd
added	FL_integration/Mutationaldata/TOP20percentile_separatefomutations_cna.Rmd
added	FL_integration/RNASeq/DeEx_FLCohort_CibersortXimputed.R
added	FL_integration/RNASeq/DeEx_FLipiBTK_CibersortXimputed.R
added	FL_integration/RNASeq/IDconversion_Annotation.Rmd
added	FL_integration/RNASeq/hgnc-symbol-check.csv
added	FL_integration/RNASeq/preNFLvstFL_volcano_exactT.R
added	FL_integration/RNASeq/volcanoPlot_Hanetal,CancerDiscovery.R
added	FL_integration/Readme.md
added	Figure1_drivers.R
added	Figures/Figure1_drivers.R
added	Figures/Figure2_GD.R
added	Figures/Figure3.R
added	Figures/Heatmap_Figure5C.R
added	Figures/clonevol/clonevol_P10_311018.R
added	Figures/clonevol/clonevol_P11_081118.R

.DS_Store

Binary file was added.

.gitignore Diff Switch to side-by-side view

EarlyStableCN/determine_allCNbreaks.R Diff Switch to side-by-side view

EarlyStableCN/find_earlystable.R Diff Switch to side-by-side view

FL_integration/CibersortX/1_cibersort.sh Diff Switch to side-by-side view

FL_integration/CibersortX/2_Omit_NA_ribosomal_proteins_zerovariancegenes.R Diff Switch to side-by-side view

FL_integration/CibersortX/3_PlottingLM4_FL_Normal_Protein_coding1_Cell_fractions_cibersortx.ipynb Diff Switch to side-by-side view

FL_integration/CibersortX/4_LM4_Tumor_purity_correlation_fl_normal.ipynb Diff Switch to side-by-side view

FL_integration/CibersortX/merged_classes_LM4.txt Diff Switch to side-by-side view

FL_integration/Mutationaldata/Metadata_Mutation_matrix.Rmd Diff Switch to side-by-side view

FL_integration/Mutationaldata/TOP20percentile_separatefomutations_cna.Rmd Diff Switch to side-by-side view

FL_integration/RNASeq/DeEx_FLCohort_CibersortXimputed.R Diff Switch to side-by-side view

FL_integration/RNASeq/DeEx_FLipiBTK_CibersortXimputed.R Diff Switch to side-by-side view

FL_integration/RNASeq/IDconversion_Annotation.Rmd Diff Switch to side-by-side view

FL_integration/RNASeq/hgnc-symbol-check.csv Diff Switch to side-by-side view

FL_integration/RNASeq/preNFLvstFL_volcano_exactT.R Diff Switch to side-by-side view

FL_integration/RNASeq/volcanoPlot_Hanetal,CancerDiscovery.R Diff Switch to side-by-side view

FL_integration/Readme.md Diff Switch to side-by-side view

Figure1_drivers.R Diff Switch to side-by-side view

Figures/Figure1_drivers.R Diff Switch to side-by-side view

Figures/Figure2_GD.R Diff Switch to side-by-side view

Figures/Figure3.R Diff Switch to side-by-side view

Figures/Heatmap_Figure5C.R Diff Switch to side-by-side view

Figures/clonevol/clonevol_P10_311018.R Diff Switch to side-by-side view

Figures/clonevol/clonevol_P11_081118.R Diff Switch to side-by-side view

1 2 3 > >> (Page 1 of 3)