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b/docs/GAMBL/ARID1A.html |
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<!DOCTYPE html> |
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<html> |
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<head> |
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<meta charset="utf-8"> |
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</head> |
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<body> |
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<script src="https://proteinpaint.stjude.org/bin/proteinpaint.js" charset="utf-8"></script> |
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<div id=aaa style="margin:10px"></div> |
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<script> |
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runproteinpaint({ |
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host:'https://proteinpaint.stjude.org', |
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holder:document.getElementById('aaa'), |
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gene: 'ARID1A', |
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genome:'hg19', |
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block:1, |
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positionbygene:'ARID1A', |
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tracks:[ |
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{ |
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type:"bigwig", |
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url:"https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/DLBCL_genome.10.bw", |
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name:"DLBCL mutation density", |
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height:50, |
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pcolor: "#479450" |
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}, |
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{ |
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type:"bigwig", |
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url:"https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/BL_genome.10.bw", |
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name:"BL mutation density", |
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height:50, |
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pcolor: "#926CAD" |
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}, |
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{ |
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type:"bigwig", |
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url:"https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/FL_genome.10.bw", |
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name:"FL mutation density", |
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height:50, |
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pcolor: "#EA8368" |
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}, |
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{ |
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type:"bigwig", |
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url:"https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/MCL_genome.10.bw", |
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name:"MCL mutation density", |
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height:50, |
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pcolor: "#40E0D0" |
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}, |
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{ |
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type:'mds3', |
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name:'GAMBL DLBCL', |
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bcf: { |
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url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/DLBCL_genomes.22-04-24.vcf.gz' |
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} |
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}, |
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{ |
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type:'mds3', |
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name:'GAMBL FLs', |
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bcf: { |
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url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/grch37/20-05-24/FL_genomes.vcf.gz' |
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} |
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}, |
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{ |
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type:'mds3', |
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name:'GAMBL BLs', |
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bcf: { |
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url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/grch37/20-05-24/BL_genomes.vcf.gz' |
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} |
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}, |
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{ |
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type:'mds3', |
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name:'GAMBL MCLs', |
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bcf: { |
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url: 'https://github.com/morinlab/LLMPP/raw/main/hubs/proteinpaint/data/grch37/20-05-24/MCL_genomes.vcf.gz' |
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} |
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} |
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], |
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nativetracks: 'RefGene', |
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noheader:true, |
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nobox:true |
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}) |
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</script> |
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</body> |
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</html> |