--- a +++ b/man/readDACData.Rd @@ -0,0 +1,42 @@ +% Generated by roxygen2 (4.1.1): do not edit by hand +% Please edit documentation in R/readDACData.R +\name{readDACData} +\alias{readDACData} +\title{Read DLBCL class files} +\usage{ +readDACData(geo_nbr) +} +\arguments{ +\item{geo_nbr}{A \code{character} string giving the GSE number.} +} +\value{ +A \code{data.frame} of the predicted classes and the class + probabilities. Returns \code{NULL} if \code{geo_nbr} is not found. +} +\description{ +Functions to read the internal data files of classified CEL files using +the DLBCL Automatic Classifier (DAC) [1]. These were manually supplied to the +DAC Windows interface. +} +\note{ +The GSE11318 dataset was not classified using the DAC. +} +\examples{ +head(DLBCL_overview[, -c(3,4,6)]) + +head(readDACData("GSE19246")) + +readDACData("UNSUPPORTED_STUDY") +} +\author{ +Anders Ellern Bilgrau \cr + Steffen Falgreen +} +\references{ +[1] Care, M. A., Barrans, S., Worrillow, L., Jack, A., Westhead, D. R., & + Tooze, R. M. (2013). A microarray platform-independent classification + tool for cell of origin class allows comparative analysis of gene + expression in diffuse large B-cell lymphoma. + PloS One, 8(2), e55895. doi:10.1371/journal.pone.0055895 +} +