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b/man/readDACData.Rd |
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% Generated by roxygen2 (4.1.1): do not edit by hand |
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% Please edit documentation in R/readDACData.R |
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\name{readDACData} |
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\alias{readDACData} |
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\title{Read DLBCL class files} |
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\usage{ |
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readDACData(geo_nbr) |
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} |
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\arguments{ |
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\item{geo_nbr}{A \code{character} string giving the GSE number.} |
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} |
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\value{ |
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A \code{data.frame} of the predicted classes and the class |
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probabilities. Returns \code{NULL} if \code{geo_nbr} is not found. |
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} |
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\description{ |
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Functions to read the internal data files of classified CEL files using |
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the DLBCL Automatic Classifier (DAC) [1]. These were manually supplied to the |
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DAC Windows interface. |
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} |
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\note{ |
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The GSE11318 dataset was not classified using the DAC. |
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} |
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\examples{ |
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head(DLBCL_overview[, -c(3,4,6)]) |
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head(readDACData("GSE19246")) |
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readDACData("UNSUPPORTED_STUDY") |
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} |
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\author{ |
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Anders Ellern Bilgrau \cr |
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Steffen Falgreen |
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} |
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\references{ |
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[1] Care, M. A., Barrans, S., Worrillow, L., Jack, A., Westhead, D. R., & |
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Tooze, R. M. (2013). A microarray platform-independent classification |
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tool for cell of origin class allows comparative analysis of gene |
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expression in diffuse large B-cell lymphoma. |
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PloS One, 8(2), e55895. doi:10.1371/journal.pone.0055895 |
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} |
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