--- a
+++ b/man/preprocessCELFiles.Rd
@@ -0,0 +1,36 @@
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/preprocessCELFiles.R
+\name{preprocessCELFiles}
+\alias{preprocessCELFiles}
+\title{RMA preprocess CEL files}
+\usage{
+preprocessCELFiles(cel_files, cdf = c("affy", "brainarray"), target,
+  version = getLatestVersion(), background = TRUE, normalize = TRUE)
+}
+\arguments{
+\item{cel_files}{A character vector of .CEL files.}
+
+\item{cdf}{A character specifying the CDF type to use. Should be either
+\code{"brainarray"} or \code{"affy"}.}
+
+\item{target}{Specifies the "target" CDF to use depending on \code{cdf}.
+If \code{cdf} is \code{"affy"} then \code{target} is e.g. \code{"core"}.
+If \code{cdf} is \code{"brainarray"} then \code{target} is
+e.g. \code{"ensg"}, \code{"entrez"}.
+See \code{listTargets()} to list the available targets.}
+
+\item{version}{A character giving the brainarray version to be used.
+Only used if \code{cdf} is \code{"brainarray"}. See \code{listVersions()}.}
+
+\item{background}{boolean. Should RMA background correction be performed?}
+
+\item{normalize}{boolean. Should RMA normalization be performed?}
+}
+\value{
+An expression set object.
+}
+\description{
+General function for RMA processing microarray data. Automatically downloads
+custom Brainarray chip definition files (cdf) if wanted.
+}
+