% Generated by roxygen2 (4.1.1): do not edit by hand

% Please edit documentation in R/downloadAndProcessDLBCL.R

\name{downloadAndProcessDLBCL}

\alias{downloadAndProcessDLBCL}

\title{Download and process all curated DLBCL datasets}

\usage{

downloadAndProcessDLBCL(...)

}

\arguments{

\item{\dots}{Arguments passed to \code{\link{downloadAndProcessGEO}}.}

}

\value{

Saves a \code{list} of the processed datasets in the working

  directory named "dlbcl_data.Rds".

  Invisibly returns a \code{list} of the output of

  \code{\link{downloadAndProcessGEO}}.

}

\description{

Automatically download and process all support curated DLBCL datasets.

Simply loops over all datasets in \code{data(dlbcl_overview)}.

}

\examples{

listTargets("brainarray")

\dontrun{

# Warning, very long processing times if data is not downloaded.

# Preprocess with brainarray "Entrez" gene ids

res <- downloadAndProcessDLBCL(cdf = "brainarray", target = "ENTREZG",

                               clean = FALSE)

# Preprocess with brainarray "Ensembl" gene ids

res2 <- downloadAndProcessDLBCL(cdf = "brainarray", target = "ENSG",

                                clean = TRUE)

# Preprocess with affy's probesets

res3 <- downloadAndProcessDLBCL()  #= downloadAndProcessDLBCL(cdf = "affy")

}

}

\author{

Anders Ellern Bilgrau\cr

  Steffen Falgreen Larsen

}