--- a
+++ b/man/downloadAndPrepareCELFiles.Rd
@@ -0,0 +1,39 @@
+% Generated by roxygen2 (4.1.1): do not edit by hand
+% Please edit documentation in R/downloadAndPrepareCELFiles.R
+\name{downloadAndPrepareCELFiles}
+\alias{downloadAndPrepareCELFiles}
+\title{Download GEO .CEL files}
+\usage{
+downloadAndPrepareCELFiles(geo_nbr, destdir = getwd(), clean = FALSE,
+  verbose = TRUE)
+}
+\arguments{
+\item{geo_nbr}{The GEO ascession number.}
+
+\item{destdir}{The destination dir of the downloaded files.}
+
+\item{clean}{Should the strictly unnessesary files be deleted?}
+
+\item{verbose}{Signal the process.}
+}
+\description{
+Function for downloading the CEL files of a GEO dataset and prepare it for
+preprocessing.
+The function uses \code{getGEOSuppFiles} which downloads the data. The
+function then unzips the data files in the GEO series.
+}
+\note{
+The function will overwrite existing files in the \code{destdir}.
+}
+\examples{
+\dontrun{
+downloadAndPrepareCELFiles(geo_nbr = "GSE18376",
+                          destdir = tempdir())
+}
+}
+\author{
+Anders Ellern Bilgrau,
+  Steffen Falgreen Larsen
+}
+\keyword{internal}
+