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a b/inst/extdata/predictions-GSE56315.txt
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Sample  PredictedClass  Conf_TypeIII    Conf_ABC    Conf_GCB
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l1_e1_H1_a1_U133.Plus.2.0.CEL   GCB 0.033   0.353   0.614
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l1_e1_H10_a10_U133.Plus.2.0.CEL ABC 0.145   0.79    0.065
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l1_e1_H11_a11_U133.Plus.2.0.CEL GCB 0.275   0.019   0.705
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l1_e2_H12_a72_.HG.U133_Plus_2..CEL  GCB 0.093   0.003   0.904
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l1_e1_H13_a13_U133.Plus.2.0.CEL ABC 0.018   0.582   0.4
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l1_e1_H14_a65_.HG.U133_Plus_2..CEL  GCB 0.322   0.019   0.66
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l1_e1_H15_a15_U133.Plus.2.0.CEL GCB 0.1 0.014   0.886
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l1_e1_H18_a17_U133.Plus.2.0.CEL ABC 0.171   0.487   0.342
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l1_e1_H19_a18_U133.Plus.2.0.CEL TypeIII 0.633   0.013   0.355
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l1_e2_H2_a71_.HG.U133_Plus_2..CEL   TypeIII 0.675   0.204   0.121
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l1_e1_H20_a19_U133.Plus.2.0.CEL ABC 0.109   0.837   0.054
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l1_e1_H21_a20_U133.Plus.2.0.CEL GCB 0.126   0   0.874
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l1_e2_H22_a77_.HG.U133_Plus_2..CEL  ABC 0.102   0.643   0.254
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l1_e1_H23_a22_U133.Plus.2.0.CEL ABC 0.222   0.741   0.037
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l1_e1_H24_a23_U133.Plus.2.0.CEL ABC 0.259   0.462   0.279
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l1_e1_H25_a24_U133.Plus.2.0.CEL ABC 0.222   0.695   0.083
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l1_e1_H28_a27_U133.Plus.2.0.CEL GCB 0.086   0.004   0.91
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H284_.HG.U133_Plus_2..CEL   GCB 0.118   0   0.882
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H285_.HG.U133_Plus_2..CEL   GCB 0.089   0.004   0.908
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l1_e1_H29_a28_U133.Plus.2.0.CEL GCB 0.011   0.231   0.759
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H295_.HG.U133_Plus_2..CEL   TypeIII 0.78    0.01    0.21
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H296_.HG.U133_Plus_2..CEL   GCB 0.088   0.008   0.903
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H297_.HG.U133_Plus_2..CEL   ABC 0.447   0.55    0.003
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l1_e1_H3_a3_U133.Plus.2.0.CEL   ABC 0.11    0.885   0.005
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l1_e1_H30_a29_U133.Plus.2.0.CEL TypeIII 0.499   0.161   0.341
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H300_.HG.U133_Plus_2..CEL   ABC 0.406   0.495   0.098
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H302_.HG.U133_Plus_2..CEL   GCB 0.086   0.006   0.909
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l1_e1_H31_a30_U133.Plus.2.0.CEL GCB 0.115   0.005   0.881
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H318_.HG.U133_Plus_2..CEL   GCB 0.1 0.009   0.892
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H321_.HG.U133_Plus_2..CEL   GCB 0.018   0.145   0.837
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l1_e1_H33_a32_U133.Plus.2.0.CEL ABC 0.205   0.766   0.029
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H330_.HG.U133_Plus_2..CEL   GCB 0.1 0.008   0.892
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H333_.HG.U133_Plus_2..CEL   ABC 0.34    0.611   0.048
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l1_e1_H34_a33_U133.Plus.2.0.CEL TypeIII 0.851   0.036   0.113
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H344_.HG.U133_Plus_2..CEL   GCB 0.261   0.011   0.728
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H345_.HG.U133_Plus_2..CEL   ABC 0.363   0.508   0.129
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l1_e1_H35_a34_U133.Plus.2.0.CEL ABC 0.098   0.894   0.008
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l1_e1_H36_a35_U133.Plus.2.0.CEL ABC 0.098   0.902   0
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l1_e1_H37_a36_U133.Plus.2.0.CEL GCB 0.086   0.004   0.91
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H371_.HG.U133_Plus_2..CEL   ABC 0.334   0.6 0.066
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H378_.HG.U133_Plus_2..CEL   ABC 0.3 0.604   0.096
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l1_e1_H38_a37_U133.Plus.2.0.CEL ABC 0.103   0.89    0.007
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H380_.HG.U133_Plus_2..CEL   GCB 0.097   0.007   0.896
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l1_e1_H4_a4_U133.Plus.2.0.CEL   GCB 0.13    0.02    0.85
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l1_e1_H41_a40_U133.Plus.2.0.CEL ABC 0.33    0.58    0.091
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l1_e1_H42_a41_U133.Plus.2.0.CEL GCB 0.113   0.042   0.845
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l1_e1_H43_a42_U133.Plus.2.0.CEL GCB 0.428   0.003   0.569
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l1_e1_H44_a43_U133.Plus.2.0.CEL ABC 0.339   0.427   0.234
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l2_e1_H45_a68_.HG.U133_Plus_2..CEL  ABC 0.125   0.827   0.047
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l1_e1_H46_a45_U133.Plus.2.0.CEL GCB 0.437   0.005   0.559
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l1_e1_H47_a46_U133.Plus.2.0.CEL GCB 0.151   0.14    0.709
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H473_.HG.U133_Plus_2..CEL   ABC 0.198   0.697   0.105
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H479_.HG.U133_Plus_2..CEL   GCB 0.023   0.101   0.876
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l1_e1_H48_a47_U133.Plus.2.0.CEL ABC 0.122   0.878   0
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H484_.HG.U133_Plus_2..CEL   ABC 0.193   0.713   0.094
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l1_e1_H49_a48_U133.Plus.2.0.CEL GCB 0.158   0.004   0.837
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l1_e1_H50_a49_U133.Plus.2.0.CEL GCB 0.211   0.111   0.678
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l1_e1_H51_a50_U133.Plus.2.0.CEL GCB 0.142   0.003   0.856
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l1_e1_H52_a51_U133.Plus.2.0.CEL ABC 0.143   0.572   0.285
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l1_e1_H53_a52_u133.Plus.2.0.CEL GCB 0.126   0.001   0.873
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l1_e1_H54_a53_U133.Plus.2.0.CEL GCB 0.207   0.043   0.749
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l1_e1_H55_a54_U133.Plus.2.0.CEL ABC 0.344   0.389   0.267
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l1_e1_H56_a55_U133.Plus.2.0.CEL TypeIII 0.853   0.022   0.125
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l1_e1_H57_a56_U133.Plus.2.0.CEL GCB 0.088   0.003   0.908
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l1_e1_H58_a57_U133.Plus.2.0.CEL GCB 0.386   0.221   0.393
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l1_e1_H59_a58_U133.Plus.2.0.CEL TypeIII 0.477   0.078   0.445
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l1_e1_H6_a6_U133.Plus.2.0.CEL   GCB 0.169   0.004   0.827
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l1_e1_H60_a59_U133.Plus.2.0.CEL GCB 0.124   0.042   0.834
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l1_e1_.H7_a7_U133.Plus.2.0.CEL  GCB 0.13    0.004   0.865
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l1_e1_H8_a8_U133.Plus.2.0.CEL   ABC 0.145   0.852   0.003
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l1_e1_H9_a9_U133.Plus.2.0.CEL   GCB 0.1 0.008   0.891
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H437_.HG.U133_Plus_2..CEL   GCB 0.121   0   0.879
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H438_.HG.U133_Plus_2..CEL   TypeIII 0.498   0.477   0.025
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H439_.HG.U133_Plus_2..CEL   GCB 0.189   0   0.811
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H440_.HG.U133_Plus_2..CEL   TypeIII 0.647   0.304   0.049
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H441_.HG.U133_Plus_2..CEL   ABC 0.101   0.658   0.241
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H442_.HG.U133_Plus_2..CEL   TypeIII 0.471   0.45    0.079
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H443_.HG.U133_Plus_2..CEL   GCB 0.009   0.107   0.883
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H444_.HG.U133_Plus_2..CEL   GCB 0.091   0.004   0.905
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H446_.HG.U133_Plus_2..CEL   GCB 0.322   0.021   0.658
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H447_.HG.U133_Plus_2..CEL   GCB 0.054   0.22    0.726
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H448_.HG.U133_Plus_2..CEL   GCB 0.429   0.056   0.515
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H449_.HG.U133_Plus_2..CEL   ABC 0.216   0.533   0.251
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H450_.HG.U133_Plus_2..CEL   TypeIII 0.572   0.396   0.032
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H451_.HG.U133_Plus_2..CEL   GCB 0.136   0.238   0.626
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H452_.HG.U133_Plus_2..CEL   ABC 0.202   0.759   0.039
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H454_.HG.U133_Plus_2..CEL   TypeIII 0.815   0.004   0.181
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H456_.HG.U133_Plus_2..CEL   TypeIII 0.438   0.338   0.223
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H457_.HG.U133_Plus_2..CEL   GCB 0.086   0.004   0.91