--- a +++ b/inst/extdata/predictions-GSE56315.txt @@ -0,0 +1,90 @@ +Sample PredictedClass Conf_TypeIII Conf_ABC Conf_GCB +l1_e1_H1_a1_U133.Plus.2.0.CEL GCB 0.033 0.353 0.614 +l1_e1_H10_a10_U133.Plus.2.0.CEL ABC 0.145 0.79 0.065 +l1_e1_H11_a11_U133.Plus.2.0.CEL GCB 0.275 0.019 0.705 +l1_e2_H12_a72_.HG.U133_Plus_2..CEL GCB 0.093 0.003 0.904 +l1_e1_H13_a13_U133.Plus.2.0.CEL ABC 0.018 0.582 0.4 +l1_e1_H14_a65_.HG.U133_Plus_2..CEL GCB 0.322 0.019 0.66 +l1_e1_H15_a15_U133.Plus.2.0.CEL GCB 0.1 0.014 0.886 +l1_e1_H18_a17_U133.Plus.2.0.CEL ABC 0.171 0.487 0.342 +l1_e1_H19_a18_U133.Plus.2.0.CEL TypeIII 0.633 0.013 0.355 +l1_e2_H2_a71_.HG.U133_Plus_2..CEL TypeIII 0.675 0.204 0.121 +l1_e1_H20_a19_U133.Plus.2.0.CEL ABC 0.109 0.837 0.054 +l1_e1_H21_a20_U133.Plus.2.0.CEL GCB 0.126 0 0.874 +l1_e2_H22_a77_.HG.U133_Plus_2..CEL ABC 0.102 0.643 0.254 +l1_e1_H23_a22_U133.Plus.2.0.CEL ABC 0.222 0.741 0.037 +l1_e1_H24_a23_U133.Plus.2.0.CEL ABC 0.259 0.462 0.279 +l1_e1_H25_a24_U133.Plus.2.0.CEL ABC 0.222 0.695 0.083 +l1_e1_H28_a27_U133.Plus.2.0.CEL GCB 0.086 0.004 0.91 +H284_.HG.U133_Plus_2..CEL GCB 0.118 0 0.882 +H285_.HG.U133_Plus_2..CEL GCB 0.089 0.004 0.908 +l1_e1_H29_a28_U133.Plus.2.0.CEL GCB 0.011 0.231 0.759 +H295_.HG.U133_Plus_2..CEL TypeIII 0.78 0.01 0.21 +H296_.HG.U133_Plus_2..CEL GCB 0.088 0.008 0.903 +H297_.HG.U133_Plus_2..CEL ABC 0.447 0.55 0.003 +l1_e1_H3_a3_U133.Plus.2.0.CEL ABC 0.11 0.885 0.005 +l1_e1_H30_a29_U133.Plus.2.0.CEL TypeIII 0.499 0.161 0.341 +H300_.HG.U133_Plus_2..CEL ABC 0.406 0.495 0.098 +H302_.HG.U133_Plus_2..CEL GCB 0.086 0.006 0.909 +l1_e1_H31_a30_U133.Plus.2.0.CEL GCB 0.115 0.005 0.881 +H318_.HG.U133_Plus_2..CEL GCB 0.1 0.009 0.892 +H321_.HG.U133_Plus_2..CEL GCB 0.018 0.145 0.837 +l1_e1_H33_a32_U133.Plus.2.0.CEL ABC 0.205 0.766 0.029 +H330_.HG.U133_Plus_2..CEL GCB 0.1 0.008 0.892 +H333_.HG.U133_Plus_2..CEL ABC 0.34 0.611 0.048 +l1_e1_H34_a33_U133.Plus.2.0.CEL TypeIII 0.851 0.036 0.113 +H344_.HG.U133_Plus_2..CEL GCB 0.261 0.011 0.728 +H345_.HG.U133_Plus_2..CEL ABC 0.363 0.508 0.129 +l1_e1_H35_a34_U133.Plus.2.0.CEL ABC 0.098 0.894 0.008 +l1_e1_H36_a35_U133.Plus.2.0.CEL ABC 0.098 0.902 0 +l1_e1_H37_a36_U133.Plus.2.0.CEL GCB 0.086 0.004 0.91 +H371_.HG.U133_Plus_2..CEL ABC 0.334 0.6 0.066 +H378_.HG.U133_Plus_2..CEL ABC 0.3 0.604 0.096 +l1_e1_H38_a37_U133.Plus.2.0.CEL ABC 0.103 0.89 0.007 +H380_.HG.U133_Plus_2..CEL GCB 0.097 0.007 0.896 +l1_e1_H4_a4_U133.Plus.2.0.CEL GCB 0.13 0.02 0.85 +l1_e1_H41_a40_U133.Plus.2.0.CEL ABC 0.33 0.58 0.091 +l1_e1_H42_a41_U133.Plus.2.0.CEL GCB 0.113 0.042 0.845 +l1_e1_H43_a42_U133.Plus.2.0.CEL GCB 0.428 0.003 0.569 +l1_e1_H44_a43_U133.Plus.2.0.CEL ABC 0.339 0.427 0.234 +l2_e1_H45_a68_.HG.U133_Plus_2..CEL ABC 0.125 0.827 0.047 +l1_e1_H46_a45_U133.Plus.2.0.CEL GCB 0.437 0.005 0.559 +l1_e1_H47_a46_U133.Plus.2.0.CEL GCB 0.151 0.14 0.709 +H473_.HG.U133_Plus_2..CEL ABC 0.198 0.697 0.105 +H479_.HG.U133_Plus_2..CEL GCB 0.023 0.101 0.876 +l1_e1_H48_a47_U133.Plus.2.0.CEL ABC 0.122 0.878 0 +H484_.HG.U133_Plus_2..CEL ABC 0.193 0.713 0.094 +l1_e1_H49_a48_U133.Plus.2.0.CEL GCB 0.158 0.004 0.837 +l1_e1_H50_a49_U133.Plus.2.0.CEL GCB 0.211 0.111 0.678 +l1_e1_H51_a50_U133.Plus.2.0.CEL GCB 0.142 0.003 0.856 +l1_e1_H52_a51_U133.Plus.2.0.CEL ABC 0.143 0.572 0.285 +l1_e1_H53_a52_u133.Plus.2.0.CEL GCB 0.126 0.001 0.873 +l1_e1_H54_a53_U133.Plus.2.0.CEL GCB 0.207 0.043 0.749 +l1_e1_H55_a54_U133.Plus.2.0.CEL ABC 0.344 0.389 0.267 +l1_e1_H56_a55_U133.Plus.2.0.CEL TypeIII 0.853 0.022 0.125 +l1_e1_H57_a56_U133.Plus.2.0.CEL GCB 0.088 0.003 0.908 +l1_e1_H58_a57_U133.Plus.2.0.CEL GCB 0.386 0.221 0.393 +l1_e1_H59_a58_U133.Plus.2.0.CEL TypeIII 0.477 0.078 0.445 +l1_e1_H6_a6_U133.Plus.2.0.CEL GCB 0.169 0.004 0.827 +l1_e1_H60_a59_U133.Plus.2.0.CEL GCB 0.124 0.042 0.834 +l1_e1_.H7_a7_U133.Plus.2.0.CEL GCB 0.13 0.004 0.865 +l1_e1_H8_a8_U133.Plus.2.0.CEL ABC 0.145 0.852 0.003 +l1_e1_H9_a9_U133.Plus.2.0.CEL GCB 0.1 0.008 0.891 +H437_.HG.U133_Plus_2..CEL GCB 0.121 0 0.879 +H438_.HG.U133_Plus_2..CEL TypeIII 0.498 0.477 0.025 +H439_.HG.U133_Plus_2..CEL GCB 0.189 0 0.811 +H440_.HG.U133_Plus_2..CEL TypeIII 0.647 0.304 0.049 +H441_.HG.U133_Plus_2..CEL ABC 0.101 0.658 0.241 +H442_.HG.U133_Plus_2..CEL TypeIII 0.471 0.45 0.079 +H443_.HG.U133_Plus_2..CEL GCB 0.009 0.107 0.883 +H444_.HG.U133_Plus_2..CEL GCB 0.091 0.004 0.905 +H446_.HG.U133_Plus_2..CEL GCB 0.322 0.021 0.658 +H447_.HG.U133_Plus_2..CEL GCB 0.054 0.22 0.726 +H448_.HG.U133_Plus_2..CEL GCB 0.429 0.056 0.515 +H449_.HG.U133_Plus_2..CEL ABC 0.216 0.533 0.251 +H450_.HG.U133_Plus_2..CEL TypeIII 0.572 0.396 0.032 +H451_.HG.U133_Plus_2..CEL GCB 0.136 0.238 0.626 +H452_.HG.U133_Plus_2..CEL ABC 0.202 0.759 0.039 +H454_.HG.U133_Plus_2..CEL TypeIII 0.815 0.004 0.181 +H456_.HG.U133_Plus_2..CEL TypeIII 0.438 0.338 0.223 +H457_.HG.U133_Plus_2..CEL GCB 0.086 0.004 0.91