#' \pkg{DLBCLdata}: Automated and reproducible download and preprocessing of

#'   DLBCL data

#'

#' @description

#' An R-package for reproducible and easily available gene expression profile

#' (GEP) datasets in  Diffuse Large B-cell Lymphoma (DLBCL).

#' This package automatically downloads and preproceses the microarray data

#' using the manufacturer's or custom Brainarray chip definition files (CDF).

#'

#' The most important user function is \code{\link{downloadAndProcessGEO}} and

#' the functions documented from there. For more information, read the README

#' file \href{https://github.com/AEBilgrau/DLBCLdata}{here at GitHub.}

#'

#' @author

#'   Anders Ellern Bilgrau\cr

#'   Steffen Falgreen Larsen

#' @docType package

#' @name DLBCLdata-package

#' @aliases DLBCLdata-package DLBCLdata dlbcldata dlbcl DLBCL

#' @examples

#' # Overview of the curated available data:

#' print(DLBCL_overview[,-6])

#'

#' # Overview of all functions in DLBCLdata

#' ls("package:DLBCLdata")

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#' Overview of available DLBCL data

#'

#' A \code{data.frame} of the manually checked and curated DLBCL datasets in

#' the \pkg{DLBCLdata}-package.

#' The \code{data.frame} gives information on the GEO number, a study

#' acronym, the expanded acronym, the principal author, the arraytypes

#' present in the study, and a full citation.

#'

#' @docType data

#' @name DLBCL_overview

#' @format

#' A \code{data.frame} giving information about the DLBCL studies with the

#' following columns:\cr

#' \describe{

#'   \item{\code{GSE}}{The accession number}

#'   \item{\code{Study}}{A name or abbreviation of the study.}

#'   \item{\code{FullName}}{The full name of the study.}

#'   \item{\code{Author}}{The first author of the study.}

#'   \item{\code{ArrayTypes}}{The array type(s) used for the gene expression profiles.}

#'   \item{\code{Citationv}}{Citation information. Please double check the information

#'     if the data is used.}

#' }

#' @keywords datasets, data

#' @examples

#' print(DLBCL_overview[,-6])

#' #View(DLBCL_overview)

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