{ "cells": [ { "cell_type": "raw", "id": "266252c3-9b47-4127-a80d-8c99f1770d03", "metadata": { "tags": [] }, "source": [ "Author : Aya Balbaa\n", "\n", "email: ab72@sanger.ac.uk\n" ] }, { "cell_type": "code", "execution_count": null, "id": "60515821-6a45-405f-bfe0-5d26d788218d", "metadata": {}, "outputs": [], "source": [ "import numpy as np\n", "import pandas as pd\n", "import scanpy as sc\n", "import scrublet as scr\n", "import sys\n", "#import bbknn\n", "from statsmodels import robust\n", "import matplotlib.pyplot as plt\n", "import os.path\n", "import anndata\n", "#import harmonypy as hm\n", "\n", "sc.settings.verbosity = 3 # verbosity: errors (0), warnings (1), info (2), hints (3)\n", "#sc.settings.set_figure_params(dpi=80, color_map='viridis')\n", "#sc.logging.print_versions()" ] }, { "cell_type": "code", "execution_count": null, "id": "2ace0233-3927-4433-81b9-3e52c45b484c", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": 11, "id": "c46858c6-ef81-4d1e-aff3-7b63782e93bb", "metadata": { "tags": [] }, "outputs": [], "source": [ "#path1=\"/lustre/scratch127/cellgen/cellgeni/tickets/tic-2769/work/Sanger/gex/\"" ] }, { "cell_type": "code", "execution_count": 12, "id": "66e282b5-881d-44df-8d48-f7889af3a13a", "metadata": { "tags": [] }, "outputs": [], "source": [ "#path2= \"/output/Gene/filtered\"" ] }, { "cell_type": "code", "execution_count": 2, "id": "0a00f4b2-c034-4c7c-84ab-c41784d4d5f0", "metadata": { "tags": [] }, "outputs": [], "source": [ "path1=\"/lustre/scratch127/cellgen/cellgeni/tickets/tic-2769/work/Sanger/gex/cellbender/\"" ] }, { "cell_type": "code", "execution_count": 3, "id": "19d9b4bc-4303-4e47-b41c-07cb693f68dc", "metadata": { "tags": [] }, "outputs": [], "source": [ "path2= \"/cellbender_out/\"" ] }, { "cell_type": "code", "execution_count": 4, "id": "d1fd37a7-f39f-4054-a332-1ee3081f1c3f", "metadata": { "tags": [] }, "outputs": [], "source": [ "file_path=('/lustre/scratch126/cellgen/team298/ab72/CTCL/skin_info.csv')" ] }, { "cell_type": "code", "execution_count": 5, "id": "c6d69ac6-7775-4cf5-91fa-619818762adf", "metadata": { "tags": [] }, "outputs": [], "source": [ "samples = pd.read_csv(file_path)" ] }, { "cell_type": "code", "execution_count": 6, "id": "0755c9fb-85e5-4f8d-9db4-599f44725e54", "metadata": { "tags": [] }, "outputs": [ { "data": { "text/html": [ "
\n", " | irods/farm | \n", "Sample_type | \n", "Donor | \n", "Sample_id | \n", "Tissue | \n", "Site | \n", "Sex | \n", "
---|---|---|---|---|---|---|---|
0 | \n", "4820STDY7388991 | \n", "healthy_skin | \n", "S1 | \n", "4820STDY7388991 | \n", "Dermis | \n", "non_lesion | \n", "Female | \n", "
1 | \n", "4820STDY7388992 | \n", "healthy_skin | \n", "S1 | \n", "4820STDY7388992 | \n", "Dermis | \n", "non_lesion | \n", "Female | \n", "
2 | \n", "4820STDY7388993 | \n", "healthy_skin | \n", "S1 | \n", "4820STDY7388993 | \n", "Dermis | \n", "non_lesion | \n", "Female | \n", "
3 | \n", "4820STDY7388994 | \n", "healthy_skin | \n", "S1 | \n", "4820STDY7388994 | \n", "Dermis | \n", "non_lesion | \n", "Female | \n", "
4 | \n", "4820STDY7388995 | \n", "healthy_skin | \n", "S1 | \n", "4820STDY7388995 | \n", "Epidermis | \n", "non_lesion | \n", "Female | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
131 | \n", "CTCL3_GEX_4 | \n", "CTCL | \n", "CTCL3 | \n", "CTCL3_GEX_4 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "
132 | \n", "CTCL4_GEX_1 | \n", "CTCL | \n", "CTCL4 | \n", "CTCL4_GEX_1 | \n", "Dermis | \n", "lesion | \n", "Male | \n", "
133 | \n", "CTCL4_GEX_2 | \n", "CTCL | \n", "CTCL4 | \n", "CTCL4_GEX_2 | \n", "Dermis | \n", "lesion | \n", "Male | \n", "
134 | \n", "CTCL4_GEX_3 | \n", "CTCL | \n", "CTCL4 | \n", "CTCL4_GEX_3 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "
135 | \n", "CTCL4_GEX_4 | \n", "CTCL | \n", "CTCL4 | \n", "CTCL4_GEX_4 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "
136 rows × 7 columns
\n", "\n", " | irods/farm | \n", "Sample_type | \n", "Donor | \n", "Sample_id | \n", "Tissue | \n", "Site | \n", "Sex | \n", "path | \n", "
---|---|---|---|---|---|---|---|---|
96 | \n", "WSSS_SKN8090612 | \n", "CTCL | \n", "CTCL1 | \n", "CTCL1_GEX_1 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
97 | \n", "WSSS_SKN8090613 | \n", "CTCL | \n", "CTCL1 | \n", "CTCL1_GEX_2 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
98 | \n", "WSSS_SKN8090614 | \n", "CTCL | \n", "CTCL1 | \n", "CTCL1_GEX_3 | \n", "Dermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
99 | \n", "WSSS_SKN8090615 | \n", "CTCL | \n", "CTCL1 | \n", "CTCL1_GEX_4 | \n", "Dermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
100 | \n", "WSSS_SKN10827890 | \n", "CTCL | \n", "CTCL5 | \n", "CTCL5_Derm_45N_G | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
101 | \n", "WSSS_SKN10827891 | \n", "CTCL | \n", "CTCL5 | \n", "CTCL5_Derm_45P_8N_G | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
102 | \n", "WSSS_SKN10827892 | \n", "CTCL | \n", "CTCL5 | \n", "CTCL5_Derm_45P_8Pr_G | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
103 | \n", "WSSS_SKN10827893 | \n", "CTCL | \n", "CTCL5 | \n", "CTCL5_Epi_45N_G | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
104 | \n", "WSSS_SKN10827894 | \n", "CTCL | \n", "CTCL5 | \n", "CTCL5_Epi_45P_8N_G | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
105 | \n", "WSSS_SKN10827895 | \n", "CTCL | \n", "CTCL5 | \n", "CTCL5_Epi_45P_8Pr_G | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
106 | \n", "WSSS_SKN10827896 | \n", "CTCL | \n", "CTCL6 | \n", "CTCL6_Derm45N_G | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
107 | \n", "WSSS_SKN10827897 | \n", "CTCL | \n", "CTCL6 | \n", "CTCL6_Derm45P_8N_G | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
108 | \n", "WSSS_SKN10827898 | \n", "CTCL | \n", "CTCL6 | \n", "CTCL6_Derm45P_8Pr_G | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
109 | \n", "WSSS_SKN10827899 | \n", "CTCL | \n", "CTCL6 | \n", "CTCL6_Epi45N_G | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
110 | \n", "WSSS_SKN10827900 | \n", "CTCL | \n", "CTCL6 | \n", "CTCL6_Epi45P_8N_G | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
111 | \n", "WSSS_SKN10827901 | \n", "CTCL | \n", "CTCL6 | \n", "CTCL6_Epi45P_8Pr_G | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
112 | \n", "WSSS_SKN10827902 | \n", "CTCL | \n", "CTCL7 | \n", "CTCL7_Derm45N_G | \n", "Dermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
113 | \n", "WSSS_SKN10827903 | \n", "CTCL | \n", "CTCL7 | \n", "CTCL7_Derm45P_8N_G | \n", "Dermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
114 | \n", "WSSS_SKN10827904 | \n", "CTCL | \n", "CTCL7 | \n", "CTCL7_Derm45P_8Pr_G | \n", "Dermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
115 | \n", "WSSS_SKN10827905 | \n", "CTCL | \n", "CTCL7 | \n", "CTCL7_Epi45N_G | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
116 | \n", "WSSS_SKN10827906 | \n", "CTCL | \n", "CTCL7 | \n", "CTCL7_Epi45P_8N_G | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
117 | \n", "WSSS_SKN10827907 | \n", "CTCL | \n", "CTCL7 | \n", "CTCL7_Epi45P_8Pr_G | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
118 | \n", "WSSS_SKN10827908 | \n", "CTCL | \n", "CTCL8 | \n", "CTCL8_Derm45N_G | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
119 | \n", "WSSS_SKN10827909 | \n", "CTCL | \n", "CTCL8 | \n", "CTCL8_Derm45P_8N_G | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
120 | \n", "WSSS_SKN10827910 | \n", "CTCL | \n", "CTCL8 | \n", "CTCL8_Derm45P_8Pr_G | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
121 | \n", "WSSS_SKN10827911 | \n", "CTCL | \n", "CTCL8 | \n", "CTCL8_Epi45N_G | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
122 | \n", "WSSS_SKN10827912 | \n", "CTCL | \n", "CTCL8 | \n", "CTCL8_Epi45P_POOL_G | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
123 | \n", "CTCL2_GEX_1 | \n", "CTCL | \n", "CTCL2 | \n", "CTCL2_GEX_1 | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
124 | \n", "CTCL2_GEX_2 | \n", "CTCL | \n", "CTCL2 | \n", "CTCL2_GEX_2 | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
125 | \n", "CTCL2_GEX_3 | \n", "CTCL | \n", "CTCL2 | \n", "CTCL2_GEX_3 | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
126 | \n", "CTCL2_GEX_4 | \n", "CTCL | \n", "CTCL2 | \n", "CTCL2_GEX_4 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
127 | \n", "CTCL2_GEX_5 | \n", "CTCL | \n", "CTCL2 | \n", "CTCL2_GEX_5 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
128 | \n", "CTCL3_GEX_1 | \n", "CTCL | \n", "CTCL3 | \n", "CTCL3_GEX_1 | \n", "Dermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
129 | \n", "CTCL3_GEX_2 | \n", "CTCL | \n", "CTCL3 | \n", "CTCL3_GEX_2 | \n", "Dermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
130 | \n", "CTCL3_GEX_3 | \n", "CTCL | \n", "CTCL3 | \n", "CTCL3_GEX_3 | \n", "Dermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
131 | \n", "CTCL3_GEX_4 | \n", "CTCL | \n", "CTCL3 | \n", "CTCL3_GEX_4 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
132 | \n", "CTCL4_GEX_1 | \n", "CTCL | \n", "CTCL4 | \n", "CTCL4_GEX_1 | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
133 | \n", "CTCL4_GEX_2 | \n", "CTCL | \n", "CTCL4 | \n", "CTCL4_GEX_2 | \n", "Dermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
134 | \n", "CTCL4_GEX_3 | \n", "CTCL | \n", "CTCL4 | \n", "CTCL4_GEX_3 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
135 | \n", "CTCL4_GEX_4 | \n", "CTCL | \n", "CTCL4 | \n", "CTCL4_GEX_4 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "/lustre/scratch127/cellgen/cellgeni/tickets/ti... | \n", "
\n", " | sample_type | \n", "Donor | \n", "Sanger_ID | \n", "tissue | \n", "site | \n", "Sex | \n", "batch | \n", "n_counts | \n", "mad_prd | \n", "ds | \n", "mad_MED | \n", "mad_MAD | \n", "mad_thr | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AAACCTGAGAAGCCCA-0 | \n", "CTCL | \n", "CTCL1 | \n", "WSSS_SKN8090612 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "0 | \n", "9657.0 | \n", "False | \n", "0.054859 | \n", "0.074380 | \n", "0.045523 | \n", "0.256471 | \n", "
AAACCTGAGAATGTTG-0 | \n", "CTCL | \n", "CTCL1 | \n", "WSSS_SKN8090612 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "0 | \n", "7317.0 | \n", "False | \n", "0.105085 | \n", "0.074380 | \n", "0.045523 | \n", "0.256471 | \n", "
AAACCTGAGCCAACAG-0 | \n", "CTCL | \n", "CTCL1 | \n", "WSSS_SKN8090612 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "0 | \n", "2564.0 | \n", "False | \n", "0.207339 | \n", "0.074380 | \n", "0.045523 | \n", "0.256471 | \n", "
AAACCTGAGCGTTCCG-0 | \n", "CTCL | \n", "CTCL1 | \n", "WSSS_SKN8090612 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "0 | \n", "1501.0 | \n", "False | \n", "0.118727 | \n", "0.074380 | \n", "0.045523 | \n", "0.256471 | \n", "
AAACCTGAGTACGTTC-0 | \n", "CTCL | \n", "CTCL1 | \n", "WSSS_SKN8090612 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "0 | \n", "31221.0 | \n", "False | \n", "0.085657 | \n", "0.074380 | \n", "0.045523 | \n", "0.256471 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
TTTGTCACATGATCCA-39 | \n", "CTCL | \n", "CTCL4 | \n", "CTCL4_GEX_4 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "39 | \n", "14797.0 | \n", "False | \n", "0.120760 | \n", "0.079332 | \n", "0.040760 | \n", "0.242374 | \n", "
TTTGTCACATTACCTT-39 | \n", "CTCL | \n", "CTCL4 | \n", "CTCL4_GEX_4 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "39 | \n", "1168.0 | \n", "False | \n", "0.058511 | \n", "0.079332 | \n", "0.040760 | \n", "0.242374 | \n", "
TTTGTCAGTCCAGTAT-39 | \n", "CTCL | \n", "CTCL4 | \n", "CTCL4_GEX_4 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "39 | \n", "5442.0 | \n", "False | \n", "0.102190 | \n", "0.079332 | \n", "0.040760 | \n", "0.242374 | \n", "
TTTGTCATCACTATTC-39 | \n", "CTCL | \n", "CTCL4 | \n", "CTCL4_GEX_4 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "39 | \n", "2733.0 | \n", "False | \n", "0.070175 | \n", "0.079332 | \n", "0.040760 | \n", "0.242374 | \n", "
TTTGTCATCGGTGTTA-39 | \n", "CTCL | \n", "CTCL4 | \n", "CTCL4_GEX_4 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "39 | \n", "10016.0 | \n", "False | \n", "0.053435 | \n", "0.079332 | \n", "0.040760 | \n", "0.242374 | \n", "
346056 rows × 13 columns
\n", "\n", " | sample_type | \n", "Donor | \n", "Sanger_ID | \n", "tissue | \n", "site | \n", "Sex | \n", "batch | \n", "n_counts | \n", "mad_prd | \n", "ds | \n", "mad_MED | \n", "mad_MAD | \n", "mad_thr | \n", "n_genes | \n", "percent_mito | \n", "
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AAACCTGAGAAGCCCA-0 | \n", "CTCL | \n", "CTCL1 | \n", "WSSS_SKN8090612 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "0 | \n", "9657.0 | \n", "False | \n", "0.054859 | \n", "0.074380 | \n", "0.045523 | \n", "0.256471 | \n", "2766 | \n", "0.002692 | \n", "
AAACCTGAGAATGTTG-0 | \n", "CTCL | \n", "CTCL1 | \n", "WSSS_SKN8090612 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "0 | \n", "7317.0 | \n", "False | \n", "0.105085 | \n", "0.074380 | \n", "0.045523 | \n", "0.256471 | \n", "3106 | \n", "0.000547 | \n", "
AAACCTGAGCCAACAG-0 | \n", "CTCL | \n", "CTCL1 | \n", "WSSS_SKN8090612 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "0 | \n", "2564.0 | \n", "False | \n", "0.207339 | \n", "0.074380 | \n", "0.045523 | \n", "0.256471 | \n", "633 | \n", "0.003510 | \n", "
AAACCTGAGCGTTCCG-0 | \n", "CTCL | \n", "CTCL1 | \n", "WSSS_SKN8090612 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "0 | \n", "1501.0 | \n", "False | \n", "0.118727 | \n", "0.074380 | \n", "0.045523 | \n", "0.256471 | \n", "979 | \n", "0.039307 | \n", "
AAACCTGAGTACGTTC-0 | \n", "CTCL | \n", "CTCL1 | \n", "WSSS_SKN8090612 | \n", "Epidermis | \n", "lesion | \n", "Female | \n", "0 | \n", "31221.0 | \n", "False | \n", "0.085657 | \n", "0.074380 | \n", "0.045523 | \n", "0.256471 | \n", "4356 | \n", "0.009833 | \n", "
... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "... | \n", "
TTTGTCATCAACGCTA-26 | \n", "CTCL | \n", "CTCL8 | \n", "WSSS_SKN10827912 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "26 | \n", "3668.0 | \n", "False | \n", "0.068616 | \n", "0.106569 | \n", "0.056269 | \n", "0.331646 | \n", "960 | \n", "0.001636 | \n", "
TTTGTCATCACGCGGT-26 | \n", "CTCL | \n", "CTCL8 | \n", "WSSS_SKN10827912 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "26 | \n", "4474.0 | \n", "False | \n", "0.110778 | \n", "0.106569 | \n", "0.056269 | \n", "0.331646 | \n", "697 | \n", "0.001341 | \n", "
TTTGTCATCCAGATCA-26 | \n", "CTCL | \n", "CTCL8 | \n", "WSSS_SKN10827912 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "26 | \n", "4143.0 | \n", "False | \n", "0.068616 | \n", "0.106569 | \n", "0.056269 | \n", "0.331646 | \n", "1235 | \n", "0.000724 | \n", "
TTTGTCATCGGTCTAA-26 | \n", "CTCL | \n", "CTCL8 | \n", "WSSS_SKN10827912 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "26 | \n", "2593.0 | \n", "False | \n", "0.124797 | \n", "0.106569 | \n", "0.056269 | \n", "0.331646 | \n", "874 | \n", "0.003471 | \n", "
TTTGTCATCTTGTATC-26 | \n", "CTCL | \n", "CTCL8 | \n", "WSSS_SKN10827912 | \n", "Epidermis | \n", "lesion | \n", "Male | \n", "26 | \n", "4724.0 | \n", "False | \n", "0.082090 | \n", "0.106569 | \n", "0.056269 | \n", "0.331646 | \n", "1061 | \n", "0.001905 | \n", "
242723 rows × 15 columns
\n", "