Cutaneous-T-cell-lymphoma / Git / Commit [6e90e5]

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Cutaneous-T-cell-lymphoma

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Commit [6e90e5] main

Initial commit

Authored by: WandaB 2025-04-21

Browse code at this revision

Parent: [a5762e]

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added	README.md
added	code_final/8_CTCL_QC.ipynb
added	code_final/APC_1K_tech_cov_defaultscvi.ipynb
added	code_final/Bulk_deconvolution_BayesPrism.ipynb
added	code_final/CTCL_Tcell_TCR.ipynb
added	code_final/Cellphonedb_plot.ipynb
added	code_final/ExpressionSet_perparation.ipynb
added	code_final/Milo_APC.ipynb
added	code_final/Milo_Benign_T.ipynb
added	code_final/Milo_overall.ipynb
added	code_final/Milo_stroma.ipynb
added	code_final/NMF_programs.ipynb
added	code_final/Pseudobulk_CTCL_vs_others.ipynb
added	code_final/Pseudobulk_malignant_cell_disease_stage.ipynb
added	code_final/Pseudobulk_malignant_markers.ipynb
added	code_final/Pseudobulk_skin_layer.ipynb
added	code_final/Subcluster_Bcell_only_alldatasets.ipynb
added	code_final/Th1_2_17_proportion.ipynb
added	code_final/Volcano_DEGs.ipynb
added	code_final/allctcl_4k_5dim_100hidd_reproduce.ipynb
added	code_final/atlas_annotation-check.ipynb
added	code_final/atlas_subset-tcells.ipynb
added	code_final/cell2loc_estimate_signatures.py
added	code_final/cell2loc_predict_cell_abundance.py
added	code_final/cellphoneDB4.ipynb

README.md Diff Switch to side-by-side view

code_final/8_CTCL_QC.ipynb Diff Switch to side-by-side view

code_final/APC_1K_tech_cov_defaultscvi.ipynb Diff Switch to side-by-side view

code_final/Bulk_deconvolution_BayesPrism.ipynb Diff Switch to side-by-side view

code_final/CTCL_Tcell_TCR.ipynb Diff Switch to side-by-side view

code_final/Cellphonedb_plot.ipynb Diff Switch to side-by-side view

code_final/ExpressionSet_perparation.ipynb Diff Switch to side-by-side view

code_final/Milo_APC.ipynb Diff Switch to side-by-side view

code_final/Milo_Benign_T.ipynb Diff Switch to side-by-side view

code_final/Milo_overall.ipynb Diff Switch to side-by-side view

code_final/Milo_stroma.ipynb Diff Switch to side-by-side view

code_final/NMF_programs.ipynb Diff Switch to side-by-side view

code_final/Pseudobulk_CTCL_vs_others.ipynb Diff Switch to side-by-side view

code_final/Pseudobulk_malignant_cell_disease_stage.ipynb Diff Switch to side-by-side view

code_final/Pseudobulk_malignant_markers.ipynb Diff Switch to side-by-side view

code_final/Pseudobulk_skin_layer.ipynb Diff Switch to side-by-side view

code_final/Subcluster_Bcell_only_alldatasets.ipynb Diff Switch to side-by-side view

code_final/Th1_2_17_proportion.ipynb Diff Switch to side-by-side view

code_final/Volcano_DEGs.ipynb Diff Switch to side-by-side view

code_final/allctcl_4k_5dim_100hidd_reproduce.ipynb Diff Switch to side-by-side view

code_final/atlas_annotation-check.ipynb Diff Switch to side-by-side view

code_final/atlas_subset-tcells.ipynb Diff Switch to side-by-side view

code_final/cell2loc_estimate_signatures.py Diff Switch to side-by-side view

code_final/cell2loc_predict_cell_abundance.py Diff Switch to side-by-side view

code_final/cellphoneDB4.ipynb Diff Switch to side-by-side view

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