--- a +++ b/README.md @@ -0,0 +1,88 @@ +# CNN-ALL + +Matlab source code for the paper: + + A. Genovese, M. S. Hosseini, V. Piuri, K. N. Plataniotis, and F. Scotti, + "Acute Lymphoblastic Leukemia detection based on adaptive unsharpening and Deep Learning", + in Proc. of the 2021 IEEE Int. Conf. on Acoustics, Speech, and Signal Processing (ICASSP 2021), + Toronto, ON, Canada, June 6-11, 2021, pp. 1205-1209. + ISBN: 978-1-7281-7605-5. [DOI: 10.1109/ICASSP39728.2021.9414362] + +Paper: + +https://ieeexplore.ieee.org/document/9414362 + +Project page: + +https://iebil.di.unimi.it/cnnALL/index.htm + +Outline: + + +Citation: + + @InProceedings {icassp21, + author = {A. Genovese and M. S. Hosseini and V. Piuri and K. N. Plataniotis and F. Scotti}, + booktitle = {Proc. of the 2021 IEEE Int. Conf. on Acoustics, Speech, and Signal Processing (ICASSP 2021)}, + title = {Acute Lymphoblastic Leukemia detection based on adaptive unsharpening and Deep Learning}, + address = {Toronto, ON, Canada}, + pages = {1205-1209}, + month = {June}, + day = {6-11}, + year = {2021}, + note = {978-1-7281-7605-5} + } + +Main files: + + - launch_VARPCANet: main file + +Required files: + + - ./imgs/orig/ALL-IDB/ALL_IDB2/img: Database of images, with filenames in the format "Im001_1.tif", + the images can be downloaded at: https://homes.di.unimi.it/scotti/all/ + +Part of the code uses the Matlab source code of the paper: + + T. Chan, K. Jia, S. Gao, J. Lu, Z. Zeng and Y. Ma, + "PCANet: A Simple Deep Learning Baseline for Image Classification?," + in IEEE Transactions on Image Processing, vol. 24, no. 12, pp. 5017-5032, Dec. 2015. + DOI: 10.1109/TIP.2015.2475625 + http://mx.nthu.edu.tw/~tsunghan/Source%20codes.html + +The 1Shot-MaxPol library: + + Mahdi S. Hosseini and Konstantinos N. Plataniotis + "Convolutional Deblurring for Natural Imaging," + IEEE Transactions on Image Processing, 2019. + https://github.com/mahdihosseini/1Shot-MaxPol + +The FQPath library: + + Hosseini, Mahdi S., Jasper AZ Brawley-Hayes, Yueyang Zhang, Lyndon Chan, Konstantinos N. Plataniotis, and Savvas Damaskinos + "Focus Quality Assessment of High-Throughput Whole Slide Imaging in Digital Pathology." + IEEE Transactions on Medical Imaging (2019) + https://github.com/mahdihosseini/FQPath + +The Fast N-D Grayscale Image Segmentation library: + + Fast N-D Grayscale Image Segmenation With c- or Fuzzy c-Means + https://github.com/AntonSemechko/Fast-Fuzzy-C-Means-Segmentation + +The Stain Deconvolution library: + + SCD_FastICA + https://github.com/lisatostrams/SCD_FastICA + +and the Colour Image Normalization library: + + Finlayson, G., Schiele, B., & Crowley, J. (1998). + Comprehensive Colour Image Normalization. + Computer Vision—ECCV’98, 1406, 475–490. + https://doi.org/10.1007/BFb0055655 + https://it.mathworks.com/matlabcentral/fileexchange/60360-comprehensive-colour-normalization + + + + +