\name{mutCOM}

\alias{mutCOM}

\docType{data}

\title{

Genetic information of patient samples

}

\description{

This \code{"\linkS4class{NChannelSet}"} object contains genetic data for samples investigated in any

of the three experiments: whole exome sequencing, targeted sequencing or

fluorescent in situ hybridization. Object consists of one channel called

binary, with values: 0 if the mutation was absent, 1 if mutation was present

or NA if the mutation was not investigated. Feature data of the object

contains detailed information about mutation in TP53 and BRAF genes - the

variant(s) detected ('*_CDS' and '*_AA' columns) and the percentage at which

each variant was detected ('*_%' columns).

For TP53, BRAF, KRAS, del17p13, UMODL1, CREBBP, PRPF8 and trisomy12 mutation

an additional column 'cs' summarizes the clone size of

the mutated population. This value is a fraction at which the most abundant

variant is present in a sample.

}

\author{Małgorzata Oleś <dr.malgorzata.oles@gmail.com>}

\usage{

mutCOM

}

\format{

\code{"\linkS4class{NChannelSet}"} object with 89 genes (columns) and 265 patient samples (rows).

}

\keyword{datasets}