--- a +++ b/man/data-dds.Rd @@ -0,0 +1,34 @@ +\name{dds} +\alias{dds} +\docType{data} +\title{ +Gene expression data +} +\description{ +The object contains the gene expression data after differential +gene expression analysis performed with DESeq2 R/Bioconductor package. +The preprocessing of the RNA-Seq data included +read alignment to the human reference genome (GRCh 37.1 / hg 19; +STAR version 2.3.0), and read counting done with htseq-count +(default mode union). +} +\author{Sascha Dietrich} +\references{ +Love MI, Huber W, and Anders S. Moderated estimation of fold change +and dispersion for RNA-seq data with DESeq2. +Genome Biol. 2014;15(12):550 + +Dobin A, Davis CA, Schlesinger F, Drenkow J, Zaleski C, +Jha S, Batut P, Chaisson M, and Gingeras TR. STAR: ultrafast universal +RNA-seq aligner. Bioinformatics. 2013;29(1):15-21 + +Anders S, Pyl PT, and Huber W. HTSeq--a Python framework to work +with high-throughput sequencing data. Bioinformatics. 2015;31(2):166-9 +} +\usage{ +dds +} +\format{ +\code{"\linkS4class{DESeqDataSet}"} object with 136 CLL samples and 63677 features. +} +\keyword{datasets}