The process whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure. The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) [goid 1501] [evidence ISS]; A transition where an epithelial cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell [goid 1837] [pmid 14679171] [evidence TAS]; The series of events leading to growth of connective tissue when loss of tissues that are incapable of regeneration occurs, or when fibrinous exudate cannot be adequately cleared during or following an inflammatory response [goid 2248] [pmid 9639571] [evidence TAS]; Tolerance induction directed at self antigens [goid 2513] [evidence IEA]; The process of introducing a phosphate group on to a protein [goid 6468] [evidence ISS]; The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator [goid 6754] [pmid 10513816] [evidence IDA]; The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid [goid 6796] [pmid 10513816] [evidence IDA]; A process that directly activates any of the steps required for cell death by apoptosis [goid 6917] [pmid 15334054] [evidence IDA]; The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages [goid 6954] [evidence ISS]; The process by which the cell cycle is halted during one of the normal phases (G1, S, G2, M) [goid 7050] [pmid 14555988] [evidence IDA];  [goid 7184] [pmid 15334054] [evidence IDA]; The process by which the anatomical structures of the salivary gland are generated and organized. Morphogenesis pertains to the creation of form [goid 7435] [pmid 18080134] [evidence IEP]; The specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death [goid 8219] [evidence ISS]; Any process that activates or increases the rate or extent of cell proliferation [goid 8284] [evidence ISS]; The orderly movement of a germ cell, a cell specialized to produce haploid gametes, through the embryo from its site of production to the place where the gonads will form [goid 8354] [evidence IEA]; Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process by which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions [goid 9887] [evidence ISS]; Any process that modulates the frequency, rate or extent of striated muscle development [goid 16202] [evidence ISS]; Any process that stops, prevents or reduces the frequency, rate or extent of transcription [goid 16481] [pmid 15702480] [evidence IDA]; Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway [goid 17015] [pmid 15334054] [evidence IDA]; Any process, either active or passive, by which a virus avoids or tolerates the effects of its host organism's defense(s). Host defenses may be induced by the presence of the virus or may be preformed (e.g. physical barriers). The host is defined as the larger of the organisms involved in a symbiotic interaction [goid 19049] [pmid 15334054] [evidence IDA]; Any process that stops, prevents or reduces the frequency, rate or extent of bone formation [goid 30279] [evidence IEA]; Any process that stops, prevents or reduces the frequency, rate or extent of cell growth [goid 30308] [pmid 15334054] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of bone mineralization [goid 30501] [pmid 17401695] [evidence IEP]; The process whose specific outcome is the progression of the mammary gland over time, from its formation to the mature structure. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk [goid 30879] [evidence IEA]; Any cell cycle checkpoint that blocks entry into S phase [goid 31575] [pmid 15334054] [evidence IDA]; Any process that activates or increases the frequency, rate, or extent of interleukin-17 production [goid 32740] [pmid 18453574] [evidence IDA]; The expansion of a mononuclear cell population by cell division. A mononuclear cell is a leukocyte with a single non-segmented nucleus in the mature form [goid 32943] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals [goid 32967] [pmid 9639571] [evidence TAS]; Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a protein [goid 35307] [pmid 14555988] [evidence IDA]; Any process that stops, prevents or reduces the rate or extent of T cell proliferation [goid 42130] [evidence IEA]; Any process that modulates the frequency, rate or extent of movement of proteins from the cytoplasm to the nucleus [goid 42306] [evidence ISS]; The process by which a monocyte acquires the specialized features of a dendritic cell, an immunocompetent cell of the lymphoid and hemopoietic systems and skin [goid 43011] [evidence IEA]; The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus [goid 43029] [evidence IEA]; The formation of bone involved in the continuous turnover of bone matrix and mineral [goid 43932] [pmid 17401695] [evidence IEP]; The process by which a relatively unspecialized T cell acquires specialized features of a regulatory T cell. Regulatory T cells control or suppress immune responses through a variety of mechanisms and subsets include the CD4+CD25+ cell type as well as certain CD8+ cell types [goid 45066] [evidence IEA]; Any process that activates or increases the frequency, rate or extent of DNA-dependent transcription [goid 45893] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of progression through the mitotic cell cycle [goid 45930] [pmid 14555988] [evidence IDA]; Any process that activates or increases the frequency, rate or extent of isotype switching to IgA isotypes [goid 48298] [pmid 14988498] [evidence IDA]; The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes [goid 48535] [evidence ISS]; Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation [goid 50680] [pmid 16943770] [evidence IMP]; Any process that modulates the frequency, rate or extent of DNA binding, selective interaction with deoxyribonucleic acid [goid 51101] [evidence ISS]