a | b/NAMESPACE | ||
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1 | import("RColorBrewer") |
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2 | import("gtable") |
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3 | import("beeswarm") |
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4 | import("Biobase") |
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5 | import("devtools") |
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6 | importFrom("dplyr", arrange, desc, do, filter, first, intersect, last, mutate, rename, select, setdiff, setequal, summarise, tibble, ungroup, union, "%>%") |
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7 | import("ggdendro") |
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8 | import("ggplot2") |
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9 | import("glmnet") |
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10 | import("grDevices") |
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11 | import("grid") |
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12 | import("ipflasso") |
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13 | import("reshape2") |
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14 | importFrom("stats", aggregate, anova, aov, as.dendrogram, as.hclust, coefficients, complete.cases, cor, cor.test, df, dist, dnorm, fisher.test, hclust, line, lm, mad, median, model.matrix, order.dendrogram, p.adjust, prcomp, qnorm, quantile, relevel, reorder, setNames, smooth, t.test, sd, kmeans, as.dist, cutree, predict, coef) |
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15 | import("survival") |
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16 | import("tibble") |
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17 | import("scales") # dscale, hue_pal for pheatmapwh |
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18 | import("DESeq2") |
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19 | import("SummarizedExperiment") |
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20 | importFrom("graphics", "axTicks", "axis", "boxplot", "legend", "par","plot", "strwidth") |
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21 | importFrom("methods", "new") |
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22 | |||
23 | ## export |
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24 | export("meltWholeDF") |
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25 | export("whichInGrob") |
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26 | export("safeMatch") |
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27 | export("stripConc") |
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28 | export("deckel") |
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29 | export("pheatmapwh") |
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30 | export("giveDrugLabel") |
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31 | export("toCaps") |
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32 | export("scientific_10") |
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33 | export("percentAxisScale") |
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34 | export("col2hex") |
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35 | export("defineResponseGroups") |
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36 | export("log10div") |
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37 | export("exp10div") |
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38 | export("smunlist") |
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39 | export("moround") |
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40 | |||
41 | # From the survplot pckg |
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42 | export("nrisk") |
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43 | export("addNrisk") |
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44 | export("survplot") |