--- a +++ b/NAMESPACE @@ -0,0 +1,44 @@ +import("RColorBrewer") +import("gtable") +import("beeswarm") +import("Biobase") +import("devtools") +importFrom("dplyr", arrange, desc, do, filter, first, intersect, last, mutate, rename, select, setdiff, setequal, summarise, tibble, ungroup, union, "%>%") +import("ggdendro") +import("ggplot2") +import("glmnet") +import("grDevices") +import("grid") +import("ipflasso") +import("reshape2") +importFrom("stats", aggregate, anova, aov, as.dendrogram, as.hclust, coefficients, complete.cases, cor, cor.test, df, dist, dnorm, fisher.test, hclust, line, lm, mad, median, model.matrix, order.dendrogram, p.adjust, prcomp, qnorm, quantile, relevel, reorder, setNames, smooth, t.test, sd, kmeans, as.dist, cutree, predict, coef) +import("survival") +import("tibble") +import("scales") # dscale, hue_pal for pheatmapwh +import("DESeq2") +import("SummarizedExperiment") +importFrom("graphics", "axTicks", "axis", "boxplot", "legend", "par","plot", "strwidth") +importFrom("methods", "new") + +## export +export("meltWholeDF") +export("whichInGrob") +export("safeMatch") +export("stripConc") +export("deckel") +export("pheatmapwh") +export("giveDrugLabel") +export("toCaps") +export("scientific_10") +export("percentAxisScale") +export("col2hex") +export("defineResponseGroups") +export("log10div") +export("exp10div") +export("smunlist") +export("moround") + +# From the survplot pckg +export("nrisk") +export("addNrisk") +export("survplot")