a b/DESCRIPTION 

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Package: BloodCancerMultiOmics2017





  
  

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Type: Package





  
  

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Title: "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis





  
  

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Version: 1.27.1





  
  

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Author: Małgorzata Oleś, Sascha Dietrich, Junyan Lu, Britta Velten, Andreas Mock, Vladislav Kim, Wolfgang Huber





  
  

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Maintainer: Małgorzata Oleś <dr.malgorzata.oles@gmail.com>





  
  

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Description: The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.





  
  

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License: LGPL (>= 3)





  
  

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Encoding: UTF-8





  
  

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VignetteBuilder: knitr





  
  

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Depends: R (>= 3.5.0)





  
  

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Imports:





  
  

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    beeswarm,





  
  

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    Biobase,





  
  

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    DESeq2,





  
  

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    devtools,





  
  

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    dplyr,





  
  

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    ggdendro,





  
  

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    ggplot2,





  
  

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    glmnet,





  
  

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    graphics,





  
  

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    grDevices,





  
  

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    grid,





  
  

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    gtable,





  
  

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    ipflasso,





  
  

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    methods,





  
  

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    RColorBrewer,





  
  

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    reshape2,





  
  

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    scales,





  
  

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    stats,





  
  

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    SummarizedExperiment,





  
  

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    survival,





  
  

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    tibble





  
  

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Suggests:





  
  

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    BiocStyle,





  
  

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    knitr,





  
  

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    rmarkdown,





  
  

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    abind,





  
  

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    AnnotationDbi,





  
  

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    biomaRt,





  
  

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    broom,





  
  

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    colorspace,





  
  

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    cowplot,





  
  

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    dendsort,





  
  

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    doParallel,





  
  

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    foreach,





  
  

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    forestplot,





  
  

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    genefilter,





  
  

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    ggbeeswarm,





  
  

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    ggtern,





  
  

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    gridExtra,





  
  

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    hexbin,





  
  

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    limma,





  
  

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    magrittr,





  
  

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    Matrix,





  
  

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    maxstat,





  
  

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    nat,





  
  

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    org.Hs.eg.db,





  
  

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    pheatmap,





  
  

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    piano,





  
  

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    readxl,





  
  

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    Rtsne,





  
  

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    tidyr,





  
  

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    xtable





  
  

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biocViews: ExperimentData, ReproducibleResearch, CancerData, LeukemiaCancerData





  
  

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LazyData: true