67 lines (66 with data), 1.5 kB

Package: BloodCancerMultiOmics2017
Type: Package
Title: "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis
Version: 1.27.1
Author: Małgorzata Oleś, Sascha Dietrich, Junyan Lu, Britta Velten, Andreas Mock, Vladislav Kim, Wolfgang Huber
Maintainer: Małgorzata Oleś <dr.malgorzata.oles@gmail.com>
Description: The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.
License: LGPL (>= 3)
Encoding: UTF-8
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
Imports:
	beeswarm,
	Biobase,
	DESeq2,
	devtools,
	dplyr,
	ggdendro,
	ggplot2,
	glmnet,
	graphics,
	grDevices,
	grid,
	gtable,
	ipflasso,
	methods,
	RColorBrewer,
	reshape2,
	scales,
	stats,
	SummarizedExperiment,
	survival,
	tibble
Suggests:
	BiocStyle,
	knitr,
	rmarkdown,
	abind,
	AnnotationDbi,
	biomaRt,
	broom,
	colorspace,
	cowplot,
	dendsort,
	doParallel,
	foreach,
	forestplot,
	genefilter,
	ggbeeswarm,
	ggtern,
	gridExtra,
	hexbin,
	limma,
	magrittr,
	Matrix,
	maxstat,
	nat,
	org.Hs.eg.db,
	pheatmap,
	piano,
	readxl,
	Rtsne,
	tidyr,
	xtable
biocViews: ExperimentData, ReproducibleResearch, CancerData, LeukemiaCancerData
LazyData: true