--- a
+++ b/man/register_lung_mask.Rd
@@ -0,0 +1,49 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/register_lung_mask.R
+\name{register_lung_mask}
+\alias{register_lung_mask}
+\title{Lung Registration}
+\usage{
+register_lung_mask(
+  moving_mask,
+  fixed_mask,
+  moving = NULL,
+  sides = c("right", "left"),
+  verbose = FALSE,
+  typeofTransform = "SyN",
+  composeTransforms = NULL,
+  mask_interpolator = "nearestNeighbor",
+  interpolator = "linear",
+  ...
+)
+}
+\arguments{
+\item{moving_mask}{Mask of moving image. Right lung = 1, left lung = 2, non-lung = 0}
+
+\item{fixed_mask}{Mask of fixed image. Right lung = 1, left lung = 2, non-lung = 0}
+
+\item{moving}{Moving image to apply transformation}
+
+\item{sides}{Choose to register right and/or left lungs.}
+
+\item{verbose}{Print diagnostic messages}
+
+\item{typeofTransform}{Type of transform, passed to \code{\link{antsRegistration}}}
+
+\item{composeTransforms}{Prefix of output filename to save the composed forward transformations. The prefix will add comptx.nii.gz to the end.}
+
+\item{mask_interpolator}{Interpolator used to apply transformation to moving mask,
+passed to \code{\link{antsApplyTransforms}}}
+
+\item{interpolator}{Interpolator used to apply transformation to image,
+passed to \code{\link{antsApplyTransforms}}}
+
+\item{...}{addition arguments to pass to \code{\link{antsRegistration}}}
+}
+\value{
+A list of warped masks, images, and transformations for
+right and left lungs separately
+}
+\description{
+This function registers the right and left lung masks to a template mask. To register to the standard lung template mask, type \code{system.file("extdata", "lung_template_mask.nii.gz", package = "lungct").}
+}