|
a |
|
b/man/register_lung_mask.Rd |
|
|
1 |
% Generated by roxygen2: do not edit by hand |
|
|
2 |
% Please edit documentation in R/register_lung_mask.R |
|
|
3 |
\name{register_lung_mask} |
|
|
4 |
\alias{register_lung_mask} |
|
|
5 |
\title{Lung Registration} |
|
|
6 |
\usage{ |
|
|
7 |
register_lung_mask( |
|
|
8 |
moving_mask, |
|
|
9 |
fixed_mask, |
|
|
10 |
moving = NULL, |
|
|
11 |
sides = c("right", "left"), |
|
|
12 |
verbose = FALSE, |
|
|
13 |
typeofTransform = "SyN", |
|
|
14 |
composeTransforms = NULL, |
|
|
15 |
mask_interpolator = "nearestNeighbor", |
|
|
16 |
interpolator = "linear", |
|
|
17 |
... |
|
|
18 |
) |
|
|
19 |
} |
|
|
20 |
\arguments{ |
|
|
21 |
\item{moving_mask}{Mask of moving image. Right lung = 1, left lung = 2, non-lung = 0} |
|
|
22 |
|
|
|
23 |
\item{fixed_mask}{Mask of fixed image. Right lung = 1, left lung = 2, non-lung = 0} |
|
|
24 |
|
|
|
25 |
\item{moving}{Moving image to apply transformation} |
|
|
26 |
|
|
|
27 |
\item{sides}{Choose to register right and/or left lungs.} |
|
|
28 |
|
|
|
29 |
\item{verbose}{Print diagnostic messages} |
|
|
30 |
|
|
|
31 |
\item{typeofTransform}{Type of transform, passed to \code{\link{antsRegistration}}} |
|
|
32 |
|
|
|
33 |
\item{composeTransforms}{Prefix of output filename to save the composed forward transformations. The prefix will add comptx.nii.gz to the end.} |
|
|
34 |
|
|
|
35 |
\item{mask_interpolator}{Interpolator used to apply transformation to moving mask, |
|
|
36 |
passed to \code{\link{antsApplyTransforms}}} |
|
|
37 |
|
|
|
38 |
\item{interpolator}{Interpolator used to apply transformation to image, |
|
|
39 |
passed to \code{\link{antsApplyTransforms}}} |
|
|
40 |
|
|
|
41 |
\item{...}{addition arguments to pass to \code{\link{antsRegistration}}} |
|
|
42 |
} |
|
|
43 |
\value{ |
|
|
44 |
A list of warped masks, images, and transformations for |
|
|
45 |
right and left lungs separately |
|
|
46 |
} |
|
|
47 |
\description{ |
|
|
48 |
This function registers the right and left lung masks to a template mask. To register to the standard lung template mask, type \code{system.file("extdata", "lung_template_mask.nii.gz", package = "lungct").} |
|
|
49 |
} |