--- a
+++ b/man/radiomics_slice.Rd
@@ -0,0 +1,41 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/radiomics_slice.R
+\name{radiomics_slice}
+\alias{radiomics_slice}
+\title{Radiomic Calculation on CT Slices}
+\usage{
+radiomics_slice(
+  img,
+  mask,
+  sides = c("right", "left"),
+  plane = "axial",
+  featuresFirst = c("mean", "sd", "skew", "kurtosis", "min", "q1", "median", "q3",
+    "max", "energy", "rms", "uniformity", "entropy"),
+  featuresSpatial = c("mi", "gc", "fd"),
+  tidy = TRUE,
+  reduce = TRUE
+)
+}
+\arguments{
+\item{img}{CT scan in ANTs image file format}
+
+\item{mask}{Mask of CT scan in ANTs image file format}
+
+\item{sides}{Choose to calculate radiomic features on the right and/or left lungs. Note: Right lung = 1, left lung = 2, non-lung = 0}
+
+\item{plane}{One of: axial, coronal, sagittal}
+
+\item{featuresFirst}{First level radiomic features to calculate}
+
+\item{featuresSpatial}{Spatial radiomic features to calculate}
+
+\item{tidy}{Logical. If true, outputs a tidy dataframe with results. If false, outputs nested loop.}
+
+\item{reduce}{Logical. If true, reduces the dimensions of the scan based on extent of mask using reduce_scan.}
+}
+\value{
+Radiomic values from every slice in both the right and left lungs
+}
+\description{
+Calculate radiomic features on the each 2D slice of the whole 3D lung, right and left lungs separately
+}