--- a
+++ b/man/radiomics_partition.Rd
@@ -0,0 +1,47 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/radiomics_partition.R
+\name{radiomics_partition}
+\alias{radiomics_partition}
+\title{Radiomic Calculation on Partitioned Lung}
+\usage{
+radiomics_partition(
+  img,
+  mask,
+  sides = c("right", "left"),
+  featuresFirst = c("mean", "sd", "skew", "kurtosis", "min", "q1", "median", "q3",
+    "max", "energy", "rms", "uniformity", "entropy"),
+  featuresSpatial = c("mi", "gc", "fd"),
+  partition = NULL,
+  kernel_size = c(30, 30, 30),
+  kernel_stride = c(30, 30, 30),
+  threshold = 1000,
+  tidy = TRUE
+)
+}
+\arguments{
+\item{img}{CT scan in ANTs image file format}
+
+\item{mask}{Mask of CT scan in ANTs image file format}
+
+\item{sides}{Choose to calculate radiomic features on the right and/or left lungs. Note: Right lung = 1, left lung = 2, non-lung = 0}
+
+\item{featuresFirst}{First level radiomic features to calculate}
+
+\item{featuresSpatial}{Spatial radiomic features to calculate}
+
+\item{partition}{Matrix of x, y, and z coordinates for each partition from partition_lung. If null, partition_lung is called.}
+
+\item{kernel_size}{(If partition is null) Size of the kernel, in voxel units of width, depth, and height. Must be c(3,3,3) or greater. Default: c(30,30,30)}
+
+\item{kernel_stride}{(If partition is null) Stride (or spacing) between kernels, in voxel units, for width, depth, and height. If kernel_stride = kernel_size, the partitions are non-overlapping. If stride = c(1,1,1), then each voxel is returned.}
+
+\item{threshold}{Number of non-missing voxels needed to calculate radiomic features in each partition.}
+
+\item{tidy}{Logical. If true, outputs a tidy dataframe with results. If false, outputs nested loop.}
+}
+\value{
+Values from selected features for both left and right lungs
+}
+\description{
+Calculate radiomic features on the partitioned 3D lung
+}