--- a
+++ b/man/RIA_lung.Rd
@@ -0,0 +1,50 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/RIA_lung.R
+\name{RIA_lung}
+\alias{RIA_lung}
+\title{Calculate first-order, GLCM, and/or GLRLM radiomic features on the whole 3D lung}
+\usage{
+RIA_lung(
+  img,
+  mask,
+  sides = c("right", "left"),
+  features = c("fo", "glcm", "glrlm"),
+  bins_in = 8,
+  equal_prob = FALSE,
+  distance = 1,
+  statistic = "mean(X, na.rm = TRUE)",
+  verbose_in = TRUE
+)
+}
+\arguments{
+\item{img}{CT scan in ANTs image file format}
+
+\item{mask}{Mask of CT scan in ANTs image file format}
+
+\item{sides}{Choose to calculate radiomic features on the right and/or left lungs. Note: Right lung = 1, left lung = 2, non-lung = 0}
+
+\item{features}{Type of radiomic features to calculate. Options: first-order, GLCM, and/or GLRLM}
+
+\item{bins_in}{Number of bins to discretize image}
+
+\item{equal_prob}{logical, indicating to cut data into bins with equal relative frequencies.
+If FALSE, then equal interval bins will be used.}
+
+\item{distance}{integer, distance between the voxels being compared.}
+
+\item{statistic}{string, defining the statistic to be calculated on the array of GLCM statistics.
+By default, statistic is set to \emph{"mean"}, however any function may be provided. The proper
+syntax is: function(X, attributes). The supplied string must contain a "X", which will be replaced
+with the array of the GLCM statistics value. Further attributes of the function may also be given.
+For example, if you wish to calculate the median of all GLCMs calculated in different directions,
+then it must be supplied as: \emph{median(X, na.rm = TRUE)}.}
+
+\item{verbose_in}{logical, indicating whether to print detailed information.
+Most prints can also be suppressed using the \code{\link{suppressMessages}} function.}
+}
+\value{
+list containing the statistical information
+}
+\description{
+This is a wrapper for \code{RIA} R package. It calculates first-order, GLCM, and/or GLRLM on the whole 3D lung, left and right lungs separately
+}