# Neuroconductor Template no ANTs

language: r

sudo: false

cache: packages

warnings_are_errors: true

cran: http://cran.rstudio.com

os:

  - linux

  - osx

env:

  global:

  - R_BUILD_ARGS="--no-build-vignettes --no-manual"

  - R_CHECK_ARGS="--as-cran --install-args=--build"

  - RGL_USE_NULL=TRUE

# r_check_args: "--as-cran --install-args=--build"

before_install:

  - export RGL_USE_NULL=TRUE

  - export PROJ_DIR=`basename $PWD`

  - fname=travis_helpers.sh

  - wget -O ${fname} http://bit.ly/travis_helpers

  - cat ${fname}; source ${fname}; rm ${fname}

  - cat DESCRIPTION

  - export PACKAGE_NAME=`package_name`

  - remove_neuroc_packages

  - export ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS=1

  # does all the clang exports

  - x=`export_clang_cxx`; eval ${x}

  - echo "CC=${CC}, CXX=${CXX}, CXX1X=${CXX1X}"

  - echo "CXX1XSTD=${CXX1XSTD}, CXX11=${CXX11}"

  - clang_cxx

  - export cmake_version="3.11"

  - cmake --version

  - x=`cmake_setup`; echo "${x}"; eval ${x};

  - cmake --version

  - export ants_user=ANTsX

  - echo "Installing Missing Deps ITKR"

  - install_missing_remote_deps stnava/ITKR

  - gh_binary_install stnava/ITKR ;

  - if [[ "${PACKAGE_NAME}" != "ITKR" ]];

    then

      echo "Installing Missing Deps ANTsRCore" ;

      install_missing_remote_deps ${ants_user}/ANTsRCore;

      gh_binary_install ${ants_user}/ANTsRCore ;

    fi

  - if [[ "${PACKAGE_NAME}" != "ANTsRCore" && "${PACKAGE_NAME}" != "ITKR" ]];

    then

      echo "Installing Missing Deps ANTsR" ;

      install_missing_remote_deps ${ants_user}/ANTsR ;

      gh_binary_install ${ants_user}/ANTsR ;

    fi

  - cat DESCRIPTION

  - install_rgl_deps ;  

  - install_remotes_no_dep

  - cat DESCRIPTION

  - echo $PATH ;

after_success:

  - cat ${PACKAGE_NAME}.Rcheck/00install.out

  - cat ${PACKAGE_NAME}.Rcheck/00check.log

after_failure:

  - cat ${PACKAGE_NAME}.Rcheck/00install.out

  - cat ${PACKAGE_NAME}.Rcheck/00check.log

# need this explicitly

# for naming convention

before_deploy:

  - R CMD INSTALL --build ${PKG_TARBALL}

  # so no overwrite of linux build

  - if [ "$TRAVIS_OS_NAME" = "osx" ];

    then

      rm -f *.tar.gz ;

    fi

deploy:

  provider: releases

  skip_cleanup: true

  api_key:

    secure: 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

  file_glob: true

  file: ${PACKAGE_NAME}*.t*gz

  on:

    tags: true

    repo: muschellij2/${PROJ_DIR}

after_deploy:

  - Rscript -e 'covr::coveralls(type = "all")'