--- a
+++ b/man/ich_segment.Rd
@@ -0,0 +1,66 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/ich_segment.R
+\name{ich_segment}
+\alias{ich_segment}
+\alias{ich_process_predictors}
+\title{Predict ICH Segmentation}
+\usage{
+ich_segment(
+  img,
+  ...,
+  verbose = TRUE,
+  shiny = FALSE,
+  model = c("rf", "logistic", "big_rf"),
+  outfile = NULL
+)
+
+ich_process_predictors(
+  img,
+  mask = NULL,
+  save_imgs = FALSE,
+  outdir = NULL,
+  stub = NULL,
+  verbose = TRUE,
+  shiny = FALSE,
+  roi = NULL,
+  erode_mask = TRUE,
+  ...
+)
+}
+\arguments{
+\item{img}{CT image, object of class \code{nifti} or
+character filename}
+
+\item{...}{Additional options passsed to \code{\link{ich_preprocess}}}
+
+\item{verbose}{Print diagnostic output}
+
+\item{shiny}{Should shiny progress be called?}
+
+\item{model}{model to use for prediction,
+either the random forest (rf) or logistic}
+
+\item{outfile}{filename for native-space, smoothed,
+thresholded image.}
+
+\item{mask}{binary brain mask, object of class \code{nifti} or
+character filename}
+
+\item{save_imgs}{Logical to save all images that are created as
+predictors}
+
+\item{outdir}{Output directory of saved images, needs to be set
+if \code{save_imgs = TRUE}}
+
+\item{stub}{Basename to write image names if \code{save_imgs = TRUE}}
+
+\item{roi}{Filename of ROI, which will be transformed}
+
+\item{erode_mask}{Should the brain mask be eroded?}
+}
+\value{
+List of output prediction/probability images
+}
+\description{
+Will preprocess and predict the ICH voxels
+}