--- a
+++ b/man/dil_ero.Rd
@@ -0,0 +1,57 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/dil_ero.R
+\name{dil_ero}
+\alias{dil_ero}
+\title{Fill image holes with dilation then erosion}
+\usage{
+dil_ero(
+  file,
+  outfile = NULL,
+  nvoxels = 3,
+  zeropad = TRUE,
+  remove.ends = FALSE,
+  tol = .Machine$double.eps^0.5,
+  refill = TRUE,
+  retimg = FALSE,
+  reorient = FALSE,
+  intern = TRUE,
+  verbose = TRUE,
+  ...
+)
+}
+\arguments{
+\item{file}{(character) filename of image to be filled}
+
+\item{outfile}{(character) name of resultant filled file}
+
+\item{nvoxels}{(integer) Number of voxels to smooth over, creates vxvxv box.}
+
+\item{zeropad}{(logical) Perform \code{zero_pad} before running.}
+
+\item{remove.ends}{(logical) Remove top and bottom dilation.}
+
+\item{tol}{(double) Tolerance for thresholding after \code{\link{fft}}.}
+
+\item{refill}{(logical) Run \code{\link{fslfill}} after dilation/erosion.}
+
+\item{retimg}{(logical) return image of class nifti}
+
+\item{reorient}{(logical) If retimg, should file be reoriented when read in?
+Passed to \code{\link{readNIfTI}}.}
+
+\item{intern}{(logical) pass to \code{\link{system}}}
+
+\item{verbose}{(logical) print out command before running}
+
+\item{...}{additional arguments passed to \code{\link{readNIfTI}}.}
+}
+\value{
+character or logical depending on intern
+}
+\description{
+This function calls \code{mean_image} to dilate an image, then calls
+it again to erode it.
+}
+\note{
+This function binarizes the image before running.
+}