--- a +++ b/man/deepbleed.Rd @@ -0,0 +1,62 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/deepbleed.R +\name{download_deepbleed_model} +\alias{download_deepbleed_model} +\alias{load_deepbleed_model} +\alias{predict_deepbleed} +\alias{register_deepbleed} +\title{DeepBleed Model} +\usage{ +download_deepbleed_model(outdir = NULL) + +load_deepbleed_model(outdir = NULL) + +predict_deepbleed(image, mask = NULL, verbose = TRUE, ..., outdir = NULL) + +register_deepbleed( + image, + mask = NULL, + verbose = TRUE, + interpolator = "Linear", + ... +) +} +\arguments{ +\item{outdir}{Output directory for `DeepBleed` model} + +\item{image}{image to segment using `DeepBleed` model} + +\item{mask}{brain mask image} + +\item{verbose}{print diagnostic messages} + +\item{...}{additional arguments to send to +\code{\link{CT_Skull_Stripper_mask}}} + +\item{interpolator}{interpolation done for antsApplyTransforms} +} +\value{ +A list of the output images and predictions. +} +\description{ +DeepBleed Model +} +\note{ +\url{https://github.com/muschellij2/deepbleed} +} +\examples{ +\donttest{ +destfile = file.path(tempdir(), "01.tar.xz") +dl = download.file( + "https://archive.data.jhu.edu/api/access/datafile/1311?gbrecs=true", + destfile = destfile) +res = untar(tarfile = destfile, exdir = tempdir()) +fname = file.path(tempdir(), "01", "BRAIN_1_Anonymized.nii.gz") +mask = file.path(tempdir(), "01", "BRAIN_1_Anonymized_Mask.nii.gz") +tdir = tempfile() +dir.create(tdir) +download_deepbleed_model(outdir = tdir) +mod = load_deepbleed_model(outdir = tdir) +predict_deepbleed(fname, mask = mask, outdir = tdir) +} +}