% Generated by roxygen2: do not edit by hand

% Please edit documentation in R/deepbleed.R

\name{download_deepbleed_model}

\alias{download_deepbleed_model}

\alias{load_deepbleed_model}

\alias{predict_deepbleed}

\alias{register_deepbleed}

\title{DeepBleed Model}

\usage{

download_deepbleed_model(outdir = NULL)

load_deepbleed_model(outdir = NULL)

predict_deepbleed(image, mask = NULL, verbose = TRUE, ..., outdir = NULL)

register_deepbleed(

  image,

  mask = NULL,

  verbose = TRUE,

  interpolator = "Linear",

  ...

)

}

\arguments{

\item{outdir}{Output directory for `DeepBleed` model}

\item{image}{image to segment using `DeepBleed` model}

\item{mask}{brain mask image}

\item{verbose}{print diagnostic messages}

\item{...}{additional arguments to send to

\code{\link{CT_Skull_Stripper_mask}}}

\item{interpolator}{interpolation done for antsApplyTransforms}

}

\value{

A list of the output images and predictions.

}

\description{

DeepBleed Model

}

\note{

\url{https://github.com/muschellij2/deepbleed}

}

\examples{

\donttest{

destfile = file.path(tempdir(), "01.tar.xz")

dl = download.file(

  "https://archive.data.jhu.edu/api/access/datafile/1311?gbrecs=true",

  destfile = destfile)

res = untar(tarfile = destfile, exdir = tempdir())

fname = file.path(tempdir(), "01", "BRAIN_1_Anonymized.nii.gz")

mask = file.path(tempdir(), "01", "BRAIN_1_Anonymized_Mask.nii.gz")

tdir = tempfile()

dir.create(tdir)

download_deepbleed_model(outdir = tdir)

mod = load_deepbleed_model(outdir = tdir)

predict_deepbleed(fname, mask = mask, outdir = tdir)

}

}