output: github_document

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "",
  fig.path = "man/figures/README-"
)

ichseg

The goal of ichseg is to perform preprocessing on computed tomography (CT) scans, including skull stripping. Computes predictors of intracerebral hemorrhage (ICH) and uses these to predict a binary hemorrhage mask from the data.

Citing

To cite ichseg, you can run:

citation("ichseg")

Installation

You can install ichseg from github with:

# install.packages("devtools")
devtools::install_github("muschellij2/ichseg")

Requirements

These functions require a working installation of FSL (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation), which can be installed via Neurodebian as well: http://neuro.debian.net/pkgs/fsl-complete.html.

Prediction

In order to segment ICH from an image, use the ich_segment function:

ichseg::ich_segment(img = "/path/to/ct/scan")