This workflow generates a set of custom density unfolded templates, with adaptive spacing designed to result in (mostly) constant surface area when transformed to native space
Requirements:
- https://github.com/gllmflndn/gifti (clone into this folder)
- matlab
- hippunfold with uniform template run on a set of subjects
- here we used HCP UR100, and hippunfold unfoldDG branch
- it uses this to create an average surface area (gyrification) map
To run for hipp surf:
snakemake -np --configfile config_dentate.yml
To run for dentate surf:
snakemake -np --configfile config_dentate.yml