1948 lines (1947 with data), 282.6 kB

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[45.179305, "o", "usage: hippunfold [-h] [--pybidsdb-dir PYBIDSDB_DIR] [--reset-db] [--force-output] [--help-snakemake] [--participant-label PARTICIPANT_LABEL [PARTICIPANT_LABEL ...]]\r\n                  [--exclude_participant_label EXCLUDE_PARTICIPANT_LABEL [EXCLUDE_PARTICIPANT_LABEL ...]] [--version] --modality {T1w,T2w,hippb500,segT1w,segT2w,cropseg}\r\n                  [--derivatives DERIVATIVES] [--skip_preproc] [--skip_coreg] [--skip_inject_template_labels]\r\n                  [--inject_template_smoothing_factor INJECT_TEMPLATE_SMOOTHING_FACTOR] [--rigid_reg_template] [--no-reg-template] [--template {CITI168,dHCP}] [--t1_reg_template]\r\n                  [--crop-native-box CROP_NATIVE_BOX] [--atlas {bigbrain,magdeburg,freesurfer} [{bigbrain,magdeburg,freesurfer} ...]] [--generate-myelin-map] [--use_gpu]\r\n                  [--nnunet-enable-tta] [--output_spaces {native,T1w} [{native,T1w} ...]] [--output-density {0p5mm,1mm,2mm,unfoldiso} [{0p5mm,1mm,2mm,unfoldiso} ...]]\r\n                  [--hemi {L,R} [{L,R} ...]] [--laminar_"]
[45.179485, "o", "coords_method {laplace,equivolume}] [--keep-work]\r\n                  [--force-nnunet-model {T1w,T2w,T1T2w,b1000,trimodal,hippb500,neonateT1w}] [--filter-T2w FILTER_T2W [FILTER_T2W ...]]\r\n                  [--filter-hippb500 FILTER_HIPPB500 [FILTER_HIPPB500 ...]] [--filter-T1w FILTER_T1W [FILTER_T1W ...]] [--filter-seg FILTER_SEG [FILTER_SEG ...]]\r\n                  [--filter-cropseg FILTER_CROPSEG [FILTER_CROPSEG ...]] [--wildcards-T2w WILDCARDS_T2W [WILDCARDS_T2W ...]]\r\n                  [--wildcards-hippb500 WILDCARDS_HIPPB500 [WILDCARDS_HIPPB500 ...]] [--wildcards-T1w WILDCARDS_T1W [WILDCARDS_T1W ...]]\r\n                  [--wildcards-seg WILDCARDS_SEG [WILDCARDS_SEG ...]] [--wildcards-cropseg WILDCARDS_CROPSEG [WILDCARDS_CROPSEG ...]] [--path-T2w PATH_T2W]\r\n                  [--path-hippb500 PATH_HIPPB500] [--path-T1w PATH_T1W] [--path-seg PATH_SEG] [--path-cropseg PATH_CROPSEG]\r\n                  bids_dir output_dir {participant,group}\r\nhippunfold: error: the following arguments are required: --modality\r\n"]
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[46.951477, "o", "singularity run -e ./khanlab_hippunfold_v1.2.0.sif ./ds002168/ my_hippunfold_out participant --cores all"]
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[53.443242, "o", "\u001b[33mConfig file config/snakebids.yml is extended by additional config specified via the command line.\u001b[0m\r\n"]
[54.235785, "o", "\u001b[33mBuilding DAG of jobs...\u001b[0m\r\n"]
[54.458426, "o", "\u001b[33mUsing shell: /bin/bash\u001b[0m\r\n"]
[54.458627, "o", "\u001b[33mProvided cores: 20\u001b[0m\r\n\u001b[33mRules claiming more threads will be scaled down.\u001b[0m\r\n\u001b[33mSingularity containers: ignored\u001b[0m\r\n"]
[54.461602, "o", "\u001b[33mJob stats:\r\njob                                       count    min threads    max threads\r\n--------------------------------------  -------  -------------  -------------\r\nall                                           1              1              1\r\narchive_work_after_final                      1              1              1\r\ncalculate_curvature_from_surface              4              1              1\r\ncalculate_gyrification                        4              1              1\r\ncalculate_surface_area                        4              1              1\r\ncalculate_thickness_from_surface              2              1              1\r\ncombine_tissue_subfield_labels_corobl         2              1              1\r\ncompose_template_xfm_corobl                   1              1              1\r\ncompose_warps_native_to_unfold                4              1              1\r\ncompose_warps_unfold_to_crop_native           4              1              1\r\nconstrain_surf_to_bbox                        8            "]
[54.461758, "o", "  1              1\r\nconvert_template_xfm_ras2itk                  1              1              1\r\ncorrect_nan_vertices                          8              1              1\r\ncp_template_to_unfold                         8              1              1\r\ncreate_dlabel_cifti_subfields                 1              1              1\r\ncreate_dscalar_metric_cifti                   5              1              1\r\ncreate_native_coord_ref                       4              1              1\r\ncreate_native_crop_ref                        2              1              1\r\ncreate_spec_file_dentate                      2              1              1\r\ncreate_spec_file_hipp                         2              1              1\r\ncreate_unfold_coord_map                       2              1              1\r\ncreate_unfold_ref                             2              1              1\r\ncreate_warps_dentate                          2              1              1\r\ncreate_warps_hipp                             2         "]
[54.46186, "o", "     1              1\r\nequivolume_coords                             2              1              1\r\nget_subfield_vols_subj                        1              1              1\r\nimport_t1                                     1              1              1\r\nimport_template_shape                         1              1              1\r\ninject_init_laplace_coords                   12              8              8\r\nlabel_subfields_from_vol_coords_corobl        2              1              1\r\nlaplace_coords_dentate                        6              1              1\r\nlaplace_coords_hipp                           6              1              1\r\nlr_flip_t1                                    1              1              1\r\nmerge_lr_spec_file                            2              1              1\r\nn4_t1                                         1              8              8\r\nnii_to_label_gii                              2              1              1\r\nplot_subj_subfields                           1      "]
[54.461943, "o", "        1              1\r\nprep_equivolume_coords                        2              1              1\r\nprep_segs_for_greedy                          3              1              1\r\nqc_nnunet_dice                                2              1              1\r\nqc_nnunet_f3d                                 2              1              1\r\nqc_reg_to_template                            1              1              1\r\nqc_subfield                                   2              1              1\r\nqc_subfield_surf                              4              1              1\r\nreg_to_template                               1              1              1\r\nreinsert_subject_labels                       2              1              1\r\nresample_atlas_to_refvol                      2              1              1\r\nresample_coords_native_crop                  14              1              1\r\nresample_native_to_crop                       2              1              1\r\nresample_subfields_native_crop                2   "]
[54.462021, "o", "           1              1\r\nresample_subfields_to_native                  2              1              1\r\nrun_inference                                 2             16             16\r\nsmooth_surface                                4              1              1\r\ntemplate_shape_inject                         2              8              8\r\ntemplate_shape_reg                            2              8              8\r\ntemplate_xfm_itk2ras                          1              1              1\r\nunflip_coords                                 6              1              1\r\nunflip_coords_equivol                         1              1              1\r\nunflip_nnunet_nii                             1              1              1\r\nunflip_postproc                               1              1              1\r\nwarp_gii_to_native                            8              1              1\r\nwarp_gii_unfold2native                        8              1              1\r\nwarp_t1_to_corobl_crop                        2"]
[54.462108, "o", "              1              1\r\ntotal                                       193              1             16\r\n\u001b[0m\r\n\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[54.463409, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.463642, "o", "\u001b[32mrule cp_template_to_unfold:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_hipp/tpl-avg_space-unfold_den-0p5mm_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    jobid: 37\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=hipp, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[54.472192, "o", "\u001b[32m\u001b[0m\r\n"]
[54.472343, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.472442, "o", "\u001b[32mrule cp_template_to_unfold:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_dentate/tpl-avg_space-unfold_den-0p5mm_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    jobid: 134\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=dentate, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[54.472543, "o", "\u001b[32m\u001b[0m\r\n"]
[54.482638, "o", "\u001b[32m\u001b[0m\r\n"]
[54.483238, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.483982, "o", "\u001b[32mrule import_template_shape:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/tpl-upenn/tpl-upenn_desc-hipptissue_dseg.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_space-template_desc-hipptissue_dseg.nii.gz\r\n    jobid: 16\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_space-template_desc-hipptissue_dseg.nii.gz\r\n    wildcards: subject=1425\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[54.484202, "o", "\u001b[32m\u001b[0m\r\n"]
[54.48861, "o", "\u001b[32m\u001b[0m\r\n"]
[54.48875, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.488863, "o", "\u001b[32mrule cp_template_to_unfold:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_hipp/tpl-avg_space-unfold_den-0p5mm_outer.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_outer.surf.gii\r\n    jobid: 90\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_outer.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=hipp, surfname=outer\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[54.489041, "o", "\u001b[32m\u001b[0m\r\n"]
[54.496143, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.496259, "o", "\u001b[32mrule cp_template_to_unfold:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_dentate/tpl-avg_space-unfold_den-0p5mm_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    jobid: 116\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=dentate, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[54.496328, "o", "\u001b[32m\u001b[0m\r\n"]
[54.505765, "o", "\u001b[32m\u001b[0m\r\n"]
[54.505918, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.50636, "o", "\u001b[32mrule create_unfold_ref:\r\n    output: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz\r\n    jobid: 103\r\n    reason: Missing output files: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz\r\n    wildcards: subject=1425, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[54.506497, "o", "\u001b[32m\u001b[0m\r\n"]
[54.512794, "o", "\u001b[32m\u001b[0m\r\n"]
[54.512928, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.513098, "o", "\u001b[32mrule import_t1:\r\n    input: /home/vagrant/ds002168/sub-1425/anat/sub-1425_T1w.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_T1w.nii.gz\r\n    jobid: 21\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_T1w.nii.gz\r\n    wildcards: subject=1425\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[54.513213, "o", "\u001b[32m\u001b[0m\r\n"]
[54.519526, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.519673, "o", "\u001b[32mrule cp_template_to_unfold:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_hipp/tpl-avg_space-unfold_den-0p5mm_inner.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_inner.surf.gii\r\n    jobid: 46\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_inner.surf.gii\r\n    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=hipp, surfname=inner\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[54.519808, "o", "\u001b[32m\u001b[0m\r\n"]
[54.524874, "o", "\u001b[32m\u001b[0m\r\n"]
[54.525052, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.52519, "o", "\u001b[32mrule cp_template_to_unfold:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_hipp/tpl-avg_space-unfold_den-0p5mm_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    jobid: 75\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=hipp, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[54.525326, "o", "\u001b[32m\u001b[0m\r\n"]
[54.531627, "o", "\u001b[32m\u001b[0m\r\n"]
[54.53177, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n\u001b[32mrule create_unfold_ref:\r\n    output: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz\r\n    jobid: 10\r\n    reason: Missing output files: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz\r\n    wildcards: subject=1425, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[54.531915, "o", "\u001b[32m\u001b[0m\r\n"]
[54.534556, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.534693, "o", "\u001b[32mrule cp_template_to_unfold:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_hipp/tpl-avg_space-unfold_den-0p5mm_inner.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_inner.surf.gii\r\n    jobid: 85\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_inner.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=hipp, surfname=inner\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[54.534956, "o", "\u001b[32m\u001b[0m\r\n"]
[54.541513, "o", "\u001b[32m\u001b[0m\r\n"]
[54.541665, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.541787, "o", "\u001b[32mrule cp_template_to_unfold:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_hipp/tpl-avg_space-unfold_den-0p5mm_outer.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_outer.surf.gii\r\n    jobid: 51\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_outer.surf.gii\r\n    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=hipp, surfname=outer\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[54.542028, "o", "\u001b[32m\u001b[0m\r\n"]
[54.637817, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n\u001b[32mFinished job 16.\u001b[0m\r\n"]
[54.638114, "o", "\u001b[32m1 of 193 steps (1%) done\u001b[0m\r\n"]
[54.641085, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.641235, "o", "\u001b[32mFinished job 21.\u001b[0m\r\n"]
[54.644072, "o", "\u001b[32m2 of 193 steps (1%) done\u001b[0m\r\n\u001b[33mSelect jobs to execute...\u001b[0m\r\n\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.644397, "o", "\u001b[32mrule n4_t1:\r\n    input: work/sub-1425/anat/sub-1425_T1w.nii.gz\r\n    output: hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz\r\n    jobid: 20\r\n    reason: Missing output files: hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_T1w.nii.gz\r\n    wildcards: subject=1425\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[54.644673, "o", "\u001b[32m\u001b[0m\r\n"]
[54.653078, "o", "\u001b[32m\u001b[0m\r\n"]
[54.653407, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[54.653725, "o", "\u001b[32mrule prep_segs_for_greedy:\r\n    input: work/sub-1425/anat/sub-1425_space-template_desc-hipptissue_dseg.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_space-template_desc-hipptissue_dsegsplit\r\n    jobid: 26\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_space-template_desc-hipptissue_dsegsplit; Input files updated by another job: work/sub-1425/anat/sub-1425_space-template_desc-hipptissue_dseg.nii.gz\r\n    wildcards: prefix=work/sub-1425/anat/sub-1425_space-template_desc-hipptissue\r\n    resources: tmpdir=/tmp\u001b[0m"]
[54.653869, "o", "\r\n\u001b[32m\u001b[0m\r\n"]
[55.260387, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[55.260635, "o", "\u001b[32mFinished job 103.\u001b[0m\r\n"]
[55.260774, "o", "\u001b[32m3 of 193 steps (2%) done\u001b[0m\r\n"]
[55.261678, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[55.263222, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[55.263479, "o", "\u001b[32mrule create_unfold_coord_map:\r\n    input: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_space-unfold_label-dentate_refcoords.nii.gz\r\n    jobid: 104\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_space-unfold_label-dentate_refcoords.nii.gz; Input files updated by another job: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz\r\n    wildcards: subject=1425, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[55.263602, "o", "\u001b[32m\u001b[0m\r\n"]
[55.273422, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[55.273599, "o", "\u001b[32mFinished job 10.\u001b[0m\r\n\u001b[32m4 of 193 steps (2%) done\u001b[0m\r\n\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[55.27448, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m\r\n"]
[55.275025, "o", "\u001b[32mrule resample_atlas_to_refvol:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/bigbrain/sub-bigbrain_hemi-R_label-hipp_desc-manualsubfields_dseg.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-R_space-unfold_label-hipp_atlas-bigbrain_subfields.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-R_space-unfold_label-hipp_atlas-bigbrain_resamplesubfieldrefvol\r\n    jobid: 93\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-R_space-unfold_label-hipp_atlas-bigbrain_subfields.nii.gz; Input files updated by another job: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz\r\n    wildcards: subject=1425, hemi=R, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[55.276699, "o", "\u001b[32m\u001b[0m\r\n"]
[55.282661, "o", "\u001b[32m[Fri Nov 25 20:55:23 2022]\u001b[0m"]
[55.28275, "o", "\r\n"]
[55.283264, "o", "\u001b[32mrule resample_atlas_to_refvol:"]
[55.283376, "o", "\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/bigbrain/sub-bigbrain_hemi-L_label-hipp_desc-manualsubfields_dseg.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz"]
[55.283472, "o", "\r\n"]
[55.283553, "o", "    output: work/sub-1425/anat/sub-1425_hemi-L_space-unfold_label-hipp_atlas-bigbrain_subfields.nii.gz"]
[55.283644, "o", "\r\n"]
[55.28375, "o", "    log: logs/sub-1425/sub-1425_hemi-L_space-unfold_label-hipp_atlas-bigbrain_resamplesubfieldrefvol"]
[55.28385, "o", "\r\n"]
[55.283995, "o", "    jobid: 53"]
[55.284076, "o", "\r\n"]
[55.284155, "o", "    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-L_space-unfold_label-hipp_atlas-bigbrain_subfields.nii.gz; Input files updated by another job: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz"]
[55.28424, "o", "\r\n"]
[55.284879, "o", "    wildcards: subject=1425, hemi=L, atlas=bigbrain\r\n"]
[55.28499, "o", "    resources: tmpdir=/tmp\u001b[0m"]
[55.285127, "o", "\r\n"]
[55.285376, "o", "\u001b[32m\u001b[0m"]
[55.2855, "o", "\r\n"]
[55.34503, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m"]
[55.34566, "o", "\r\n\u001b[32mFinished job 104.\u001b[0m\r\n"]
[55.345816, "o", "\u001b[32m5 of 193 steps (3%) done\u001b[0m\r\n"]
[55.346688, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[55.3468, "o", "\r\n"]
[55.347857, "o", "\u001b[32m\u001b[0m"]
[55.347958, "o", "\r\n"]
[55.348187, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m"]
[55.34831, "o", "\r\n"]
[55.349007, "o", "\u001b[32mrule create_unfold_coord_map:"]
[55.349089, "o", "\r\n"]
[55.349176, "o", "    input: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz"]
[55.349254, "o", "\r\n"]
[55.349354, "o", "    output: work/sub-1425/coords/sub-1425_space-unfold_label-hipp_refcoords.nii.gz"]
[55.349432, "o", "\r\n"]
[55.349531, "o", "    jobid: 11\r\n"]
[55.350157, "o", "    reason: Missing output files: work/sub-1425/coords/sub-1425_space-unfold_label-hipp_refcoords.nii.gz; Input files updated by another job: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz\r\n"]
[55.350276, "o", "    wildcards: subject=1425, autotop=hipp"]
[55.35067, "o", "\r\n"]
[55.350748, "o", "    resources: tmpdir=/tmp\u001b[0m"]
[55.350813, "o", "\r\n"]
[55.350992, "o", "\u001b[32m\u001b[0m"]
[55.351571, "o", "\r\n"]
[55.487862, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m\r\n"]
[55.488003, "o", "\u001b[32mFinished job 11.\u001b[0m\r\n"]
[55.488106, "o", "\u001b[32m6 of 193 steps (3%) done\u001b[0m"]
[55.488193, "o", "\r\n"]
[55.843718, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m\r\n"]
[55.843889, "o", "\u001b[32mFinished job 134.\u001b[0m\r\n"]
[55.843966, "o", "\u001b[32m7 of 193 steps (4%) done\u001b[0m"]
[55.844031, "o", "\r\n"]
[55.844387, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[55.844465, "o", "\r\n"]
[55.845697, "o", "\u001b[32m\u001b[0m"]
[55.845773, "o", "\r\n"]
[55.845846, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m"]
[55.845917, "o", "\r\n"]
[55.84612, "o", "\u001b[32mrule constrain_surf_to_bbox:"]
[55.846849, "o", "\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-dentate_midthickness.surf.gii, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz\r\n"]
[55.846967, "o", "    output: work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-dentate_desc-constrainbbox_midthickness.surf.gii\r\n    log: logs/sub-1425/sub-1425_hemi-R_den-0p5mm_label-dentate_desc-constrainbbox_midthickness.txt"]
[55.847064, "o", "\r\n    jobid: 133\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-dentate_desc-constrainbbox_midthickness.surf.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-dentate_midthickness.surf.gii, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz"]
[55.84716, "o", "\r\n"]
[55.847241, "o", "    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=dentate, surfname=midthickness\r\n"]
[55.847312, "o", "    resources: tmpdir=/tmp\u001b[0m\r\n"]
[55.847468, "o", "\u001b[32m\u001b[0m"]
[55.847527, "o", "\r\n"]
[55.852153, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m\r\n"]
[55.852253, "o", "\u001b[32mFinished job 116.\u001b[0m"]
[55.85232, "o", "\r\n"]
[55.852523, "o", "\u001b[32m8 of 193 steps (4%) done\u001b[0m"]
[55.852591, "o", "\r\n"]
[55.856004, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m"]
[55.856093, "o", "\r\n"]
[55.856169, "o", "\u001b[32mFinished job 90.\u001b[0m"]
[55.856234, "o", "\r\n"]
[55.856388, "o", "\u001b[32m9 of 193 steps (5%) done\u001b[0m"]
[55.856474, "o", "\r\n"]
[55.858141, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m"]
[55.858876, "o", "\r\n"]
[55.858974, "o", "\u001b[32mFinished job 75.\u001b[0m\r\n"]
[55.859136, "o", "\u001b[32m10 of 193 steps (5%) done\u001b[0m"]
[55.859258, "o", "\r\n"]
[55.860923, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m"]
[55.861021, "o", "\r\n\u001b[32mFinished job 85.\u001b[0m\r\n"]
[55.86112, "o", "\u001b[32m11 of 193 steps (6%) done\u001b[0m"]
[55.86182, "o", "\r\n"]
[55.862635, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m"]
[55.863278, "o", "\r\n\u001b[32mFinished job 46.\u001b[0m"]
[55.86343, "o", "\r\n"]
[55.863602, "o", "\u001b[32m12 of 193 steps (6%) done\u001b[0m"]
[55.863678, "o", "\r\n"]
[55.865585, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m"]
[55.865759, "o", "\r\n\u001b[32mFinished job 37.\u001b[0m\r\n\u001b[32m13 of 193 steps (7%) done\u001b[0m\r\n"]
[55.866761, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m"]
[55.866836, "o", "\r\n\u001b[32mFinished job 51.\u001b[0m"]
[55.866934, "o", "\r\n"]
[55.867045, "o", "\u001b[32m14 of 193 steps (7%) done\u001b[0m"]
[55.867652, "o", "\r\n"]
[55.867727, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[55.869127, "o", "\u001b[32m\u001b[0m"]
[55.869214, "o", "\r\n"]
[55.869324, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m"]
[55.869491, "o", "\r\n\u001b[32mrule constrain_surf_to_bbox:\r\n"]
[55.869626, "o", "    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_midthickness.surf.gii, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz\r\n    output: work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_midthickness.surf.gii\r\n    log: logs/sub-1425/sub-1425_hemi-L_den-0p5mm_label-hipp_desc-constrainbbox_midthickness.txt"]
[55.869691, "o", "\r\n"]
[55.869748, "o", "    jobid: 36\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_midthickness.surf.gii; Input files updated by another job: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_midthickness.surf.gii\r\n"]
[55.869826, "o", "    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=hipp, surfname=midthickness"]
[55.869948, "o", "\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[55.870008, "o", "\u001b[32m\u001b[0m"]
[55.870091, "o", "\r\n"]
[55.871364, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m"]
[55.87146, "o", "\r\n"]
[55.872435, "o", "\u001b[32mrule constrain_surf_to_bbox:"]
[55.872513, "o", "\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_inner.surf.gii, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz"]
[55.872587, "o", "\r\n    output: work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_inner.surf.gii"]
[55.872657, "o", "\r\n"]
[55.872724, "o", "    log: logs/sub-1425/sub-1425_hemi-R_den-0p5mm_label-hipp_desc-constrainbbox_inner.txt"]
[55.872816, "o", "\r\n    jobid: 84"]
[55.87289, "o", "\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_inner.surf.gii; Input files updated by another job: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_inner.surf.gii"]
[55.872967, "o", "\r\n"]
[55.873056, "o", "    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=hipp, surfname=inner"]
[55.87362, "o", "\r\n"]
[55.873699, "o", "    resources: tmpdir=/tmp\u001b[0m\r\n"]
[55.873783, "o", "\u001b[32m\u001b[0m"]
[55.873876, "o", "\r\n"]
[55.875676, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m"]
[55.875781, "o", "\r\n"]
[55.877563, "o", "\u001b[32mrule constrain_surf_to_bbox:"]
[55.877671, "o", "\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_midthickness.surf.gii, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz"]
[55.877749, "o", "\r\n    output: work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_midthickness.surf.gii\r\n    log: logs/sub-1425/sub-1425_hemi-R_den-0p5mm_label-hipp_desc-constrainbbox_midthickness.txt"]
[55.87782, "o", "\r\n"]
[55.878617, "o", "    jobid: 74\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_midthickness.surf.gii; Input files updated by another job: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=hipp, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m"]
[55.879239, "o", "\r\n"]
[55.879553, "o", "\u001b[32m\u001b[0m"]
[55.880133, "o", "\r\n"]
[55.882159, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m"]
[55.882575, "o", "\r\n"]
[55.882765, "o", "\u001b[32mrule constrain_surf_to_bbox:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_outer.surf.gii, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz\r\n    output: work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_outer.surf.gii\r\n    log: logs/sub-1425/sub-1425_hemi-L_den-0p5mm_label-hipp_desc-constrainbbox_outer.txt\r\n    jobid: 50\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_outer.surf.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_outer.surf.gii, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz\r\n"]
[55.882873, "o", "    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=hipp, surfname=outer\r\n    resources: tmpdir=/tmp\u001b[0m"]
[55.882963, "o", "\r\n"]
[55.883547, "o", "\u001b[32m\u001b[0m\r\n"]
[55.88588, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m\r\n"]
[55.886166, "o", "\u001b[32mrule constrain_surf_to_bbox:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_outer.surf.gii, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz\r\n    output: work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_outer.surf.gii\r\n    log: logs/sub-1425/sub-1425_hemi-R_den-0p5mm_label-hipp_desc-constrainbbox_outer.txt\r\n    jobid: 89\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_outer.surf.gii; Input files updated by another job: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_outer.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=hipp, surfname=outer\r\n    resources: tmpdir=/tmp\u001b[0m"]
[55.886335, "o", "\r\n"]
[55.887036, "o", "\u001b[32m\u001b[0m\r\n"]
[55.889048, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m\r\n"]
[55.890025, "o", "\u001b[32mrule constrain_surf_to_bbox:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-dentate_midthickness.surf.gii, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz\r\n    output: work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-dentate_desc-constrainbbox_midthickness.surf.gii\r\n    log: logs/sub-1425/sub-1425_hemi-L_den-0p5mm_label-dentate_desc-constrainbbox_midthickness.txt\r\n    jobid: 115\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-dentate_desc-constrainbbox_midthickness.surf.gii; Input files updated by another job: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=dentate, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m"]
[55.890127, "o", "\r\n"]
[55.89121, "o", "\u001b[32m\u001b[0m\r\n"]
[55.895173, "o", "\u001b[32m[Fri Nov 25 20:55:24 2022]\u001b[0m\r\n"]
[55.895815, "o", "\u001b[32mrule constrain_surf_to_bbox:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_inner.surf.gii, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz\r\n    output: work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_inner.surf.gii\r\n    log: logs/sub-1425/sub-1425_hemi-L_den-0p5mm_label-hipp_desc-constrainbbox_inner.txt\r\n    jobid: 45\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_inner.surf.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_inner.surf.gii, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz\r\n    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=hipp, surfname=inner\r\n"]
[55.896495, "o", "    resources: tmpdir=/tmp\u001b[0m"]
[55.897326, "o", "\r\n"]
[55.898121, "o", "\u001b[32m\u001b[0m\r\n"]
[57.312941, "o", "\u001b[32m[Fri Nov 25 20:55:25 2022]\u001b[0m\r\n\u001b[32mFinished job 53.\u001b[0m\r\n"]
[57.313129, "o", "\u001b[32m15 of 193 steps (8%) done\u001b[0m\r\n"]
[57.314044, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[57.314835, "o", "\u001b[32m\u001b[0m\r\n"]
[57.315025, "o", "\u001b[32m[Fri Nov 25 20:55:25 2022]\u001b[0m\r\n"]
[57.315102, "o", "\u001b[32mrule nii_to_label_gii:\r\n    input: work/sub-1425/anat/sub-1425_hemi-L_space-unfold_label-hipp_atlas-bigbrain_subfields.nii.gz, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_hipp/tpl-avg_space-unfold_den-0p5mm_midthickness.surf.gii, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/bigbrain/sub-bigbrain_labellist.txt\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.label.gii\r\n    jobid: 52\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.label.gii; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-L_space-unfold_label-hipp_atlas-bigbrain_subfields.nii.gz\r\n    wildcards: subject=1425, hemi=L, space=T1w, density=0p5mm, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[57.315222, "o", "\u001b[32m\u001b[0m\r\n"]
[57.38622, "o", "\u001b[32m[Fri Nov 25 20:55:26 2022]\u001b[0m"]
[57.386372, "o", "\r\n\u001b[32mFinished job 93.\u001b[0m"]
[57.386451, "o", "\r\n"]
[57.386571, "o", "\u001b[32m16 of 193 steps (8%) done\u001b[0m"]
[57.386657, "o", "\r\n"]
[57.387112, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[57.387231, "o", "\r\n"]
[57.387839, "o", "\u001b[32m\u001b[0m"]
[57.387951, "o", "\r\n"]
[57.38803, "o", "\u001b[32m[Fri Nov 25 20:55:26 2022]\u001b[0m"]
[57.388119, "o", "\r\n"]
[57.388276, "o", "\u001b[32mrule nii_to_label_gii:"]
[57.388379, "o", "\r\n    input: work/sub-1425/anat/sub-1425_hemi-R_space-unfold_label-hipp_atlas-bigbrain_subfields.nii.gz, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_hipp/tpl-avg_space-unfold_den-0p5mm_midthickness.surf.gii, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/bigbrain/sub-bigbrain_labellist.txt"]
[57.38845, "o", "\r\n"]
[57.3885, "o", "    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.label.gii"]
[57.388553, "o", "\r\n"]
[57.388601, "o", "    jobid: 92"]
[57.388662, "o", "\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.label.gii; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-unfold_label-hipp_atlas-bigbrain_subfields.nii.gz"]
[57.388723, "o", "\r\n"]
[57.388777, "o", "    wildcards: subject=1425, hemi=R, space=T1w, density=0p5mm, atlas=bigbrain\r\n"]
[57.38887, "o", "    resources: tmpdir=/tmp\u001b[0m"]
[57.388939, "o", "\r\n"]
[57.389017, "o", "\u001b[32m\u001b[0m"]
[57.389095, "o", "\r\n"]
[57.894442, "o", "\u001b[32m[Fri Nov 25 20:55:26 2022]\u001b[0m\r\n"]
[57.894588, "o", "\u001b[32mFinished job 45.\u001b[0m\r\n"]
[57.894792, "o", "\u001b[32m17 of 193 steps (9%) done\u001b[0m"]
[57.894853, "o", "\r\n"]
[57.896499, "o", "\u001b[32m[Fri Nov 25 20:55:26 2022]\u001b[0m"]
[57.89656, "o", "\r\n"]
[57.896672, "o", "\u001b[32mFinished job 133.\u001b[0m"]
[57.896733, "o", "\r\n"]
[57.896911, "o", "\u001b[32m18 of 193 steps (9%) done\u001b[0m"]
[57.896971, "o", "\r\n"]
[57.898588, "o", "\u001b[32m[Fri Nov 25 20:55:26 2022]\u001b[0m"]
[57.898662, "o", "\r\n"]
[57.898711, "o", "\u001b[32mFinished job 84.\u001b[0m"]
[57.898767, "o", "\r\n"]
[57.898875, "o", "\u001b[32m19 of 193 steps (10%) done\u001b[0m"]
[57.898944, "o", "\r\n"]
[57.899949, "o", "\u001b[32m[Fri Nov 25 20:55:26 2022]\u001b[0m"]
[57.900011, "o", "\r\n"]
[57.900089, "o", "\u001b[32mFinished job 36.\u001b[0m"]
[57.900146, "o", "\r\n"]
[57.900237, "o", "\u001b[32m20 of 193 steps (10%) done\u001b[0m"]
[57.900297, "o", "\r\n"]
[57.901232, "o", "\u001b[32m[Fri Nov 25 20:55:26 2022]\u001b[0m"]
[57.901345, "o", "\r\n"]
[57.901437, "o", "\u001b[32mFinished job 115.\u001b[0m"]
[57.901507, "o", "\r\n"]
[57.901592, "o", "\u001b[32m21 of 193 steps (11%) done\u001b[0m"]
[57.901655, "o", "\r\n"]
[57.902405, "o", "\u001b[32m[Fri Nov 25 20:55:26 2022]\u001b[0m"]
[57.902461, "o", "\r\n"]
[57.902548, "o", "\u001b[32mFinished job 74.\u001b[0m"]
[57.902601, "o", "\r\n"]
[57.902703, "o", "\u001b[32m22 of 193 steps (11%) done\u001b[0m"]
[57.90276, "o", "\r\n"]
[57.91464, "o", "\u001b[32m[Fri Nov 25 20:55:26 2022]\u001b[0m\r\n"]
[57.914831, "o", "\u001b[32mFinished job 89.\u001b[0m\r\n"]
[57.914936, "o", "\u001b[32m23 of 193 steps (12%) done\u001b[0m\r\n"]
[57.919118, "o", "\u001b[32m[Fri Nov 25 20:55:26 2022]\u001b[0m"]
[57.919214, "o", "\r\n"]
[57.919304, "o", "\u001b[32mFinished job 50.\u001b[0m"]
[57.919379, "o", "\r\n"]
[57.919537, "o", "\u001b[32m24 of 193 steps (12%) done\u001b[0m"]
[57.919613, "o", "\r\n"]
[58.789484, "o", "\u001b[32m[Fri Nov 25 20:55:27 2022]\u001b[0m\r\n\u001b[32mFinished job 52.\u001b[0m\r\n\u001b[32m25 of 193 steps (13%) done\u001b[0m\r\n"]
[58.825197, "o", "\u001b[32m[Fri Nov 25 20:55:27 2022]\u001b[0m\r\n\u001b[32mFinished job 92.\u001b[0m\r\n"]
[58.825397, "o", "\u001b[32m26 of 193 steps (13%) done\u001b[0m\r\n"]
[58.825696, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[58.825793, "o", "\r\n"]
[58.826333, "o", "\u001b[32m\u001b[0m"]
[58.826428, "o", "\r\n"]
[58.82653, "o", "\u001b[32m[Fri Nov 25 20:55:27 2022]\u001b[0m\r\n"]
[58.826662, "o", "\u001b[32mrule create_dlabel_cifti_subfields:"]
[58.826725, "o", "\r\n"]
[58.826782, "o", "    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.label.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.label.gii"]
[58.826839, "o", "\r\n    output: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.dlabel.nii"]
[58.826911, "o", "\r\n    jobid: 91\r\n"]
[58.827005, "o", "    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.dlabel.nii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.label.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.label.gii\r\n    wildcards: subject=1425, space=T1w, density=0p5mm, atlas=bigbrain"]
[58.827058, "o", "\r\n"]
[58.827126, "o", "    resources: tmpdir=/tmp\u001b[0m\r\n"]
[58.827219, "o", "\u001b[32m\u001b[0m"]
[58.827287, "o", "\r\n"]
[58.923842, "o", "\u001b[32m[Fri Nov 25 20:55:27 2022]\u001b[0m\r\n\u001b[32mFinished job 91.\u001b[0m"]
[58.924041, "o", "\r\n"]
[58.924167, "o", "\u001b[32m27 of 193 steps (14%) done\u001b[0m\r\n"]
[88.362628, "o", "\u001b[32m[Fri Nov 25 20:55:57 2022]\u001b[0m\r\n"]
[88.362796, "o", "\u001b[32mFinished job 26.\u001b[0m"]
[88.362885, "o", "\r\n"]
[88.363297, "o", "\u001b[32m28 of 193 steps (15%) done\u001b[0m\r\n"]
[92.62057, "o", "\u001b[32m[Fri Nov 25 20:56:01 2022]\u001b[0m\r\n\u001b[32mFinished job 20.\u001b[0m\r\n"]
[92.6208, "o", "\u001b[32m29 of 193 steps (15%) done\u001b[0m\r\n"]
[92.621477, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[92.622706, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 20:56:01 2022]\u001b[0m\r\n"]
[92.623113, "o", "\u001b[32mrule reg_to_template:\r\n    input: hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/CITI168/T1w_head_700um.nii.gz, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/identity_xfm.txt\r\n    output: work/sub-1425/anat/sub-1425_space-CITI168_desc-affine_T1w.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-CITI168_type-ras_xfm.txt\r\n    jobid: 24\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_space-CITI168_desc-affine_T1w.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-CITI168_type-ras_xfm.txt; Input files updated by another job: hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz\r\n    wildcards: subject=1425\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[92.623235, "o", "\u001b[32m\u001b[0m\r\n"]
[92.663244, "o", "\r\n[NiftyReg ALADIN] Command line:\r\n\t reg_aladin -flo hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz -ref /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/CITI168/T1w_head_700um.nii.gz -res work/sub-1425/anat/sub-1425_space-CITI168_desc-affine_T1w.nii.gz -aff work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-CITI168_type-ras_xfm.txt\r\n\r\n"]
[93.346108, "o", "[reg_aladin] Parameters\r\n[reg_aladin] Reference image name: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/CITI168/T1w_head_700um.nii.gz\r\n[reg_aladin] \t198x263x212 voxels\r\n[reg_aladin] \t0.7x0.7x0.7 mm\r\n[reg_aladin] floating image name: hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz\r\n[reg_aladin] \t192x256x256 voxels\r\n[reg_aladin] \t1x1x1 mm\r\n[reg_aladin] Maximum iteration number: 5 (10 during the first level)\r\n[reg_aladin] Percentage of blocks: 50 % (100% during the first level)\r\n"]
[94.565112, "o", "[reg_aladin] Current level 1 / 3\r\n[reg_aladin] reference image size: \t49x65x53 voxels\t2.8x2.8x2.8 mm\r\n[reg_aladin] floating image size: \t48x64x64 voxels\t4.00002x4x4 mm\r\n[reg_aladin] Block size = [4 4 4]\r\n* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *\r\n[reg_aladin] Block number = [13 17 14]\r\n[reg_aladin] Initial transformation matrix::\r\n1\t0\t0\t-4.33524\r\n0\t1\t0\t67.023\r\n0\t0\t1\t-1.79366\r\n0\t0\t0\t1\r\n"]
[106.415031, "o", "[reg_aladin] Final transformation matrix::\r\n0.990171\t0.00817884\t0.0203503\t-4.93068\r\n-0.00755474\t0.991661\t-0.128698\t43.1019\r\n-0.0246277\t0.129717\t0.954492\t10.233\r\n0\t0\t0\t1\r\n- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -\r\n"]
[106.421966, "o", "[reg_aladin] Current level 2 / 3\r\n[reg_aladin] reference image size: \t99x131x106 voxels\t1.4x1.4x1.4 mm\r\n[reg_aladin] floating image size: \t96x128x128 voxels\t2.00001x2x2 mm\r\n[reg_aladin] Block size = [4 4 4]\r\n* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *\r\n[reg_aladin] Block number = [25 33 27]\r\n[reg_aladin] Initial transformation matrix::\r\n0.990171\t0.00817884\t0.0203503\t-4.93068\r\n-0.00755474\t0.991661\t-0.128698\t43.1019\r\n-0.0246277\t0.129717\t0.954492\t10.233\r\n0\t0\t0\t1\r\n"]
[114.609541, "o", "[reg_aladin] Final transformation matrix::\r\n0.987908\t0.0105682\t0.0068881\t-5.17942\r\n-0.0133402\t0.990277\t-0.140081\t43.4797\r\n-0.023193\t0.143957\t0.933565\t10.7379\r\n0\t0\t0\t1\r\n- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -\r\n"]
[114.675493, "o", "[reg_aladin] Current level 3 / 3\r\n[reg_aladin] reference image size: \t198x263x212 voxels\t0.7x0.7x0.7 mm\r\n[reg_aladin] floating image size: \t192x256x256 voxels\t1x1x1 mm\r\n[reg_aladin] Block size = [4 4 4]\r\n* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *\r\n[reg_aladin] Block number = [50 66 53]\r\n[reg_aladin] Initial transformation matrix::\r\n0.987908\t0.0105682\t0.0068881\t-5.17942\r\n-0.0133402\t0.990277\t-0.140081\t43.4797\r\n-0.023193\t0.143957\t0.933565\t10.7379\r\n0\t0\t0\t1\r\n"]
[186.481454, "o", "[reg_aladin] Final transformation matrix::\r\n0.986664\t0.0136748\t0.014529\t-5.17517\r\n-0.00926125\t1.00028\t-0.153429\t43.351\r\n-0.0215617\t0.142466\t0.945737\t10.8306\r\n0\t0\t0\t1\r\n- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -\r\n"]
[189.851643, "o", "Registration Performed in 1 min 37 sec\r\nHave a good day !\r\n"]
[189.859389, "o", "\u001b[32m[Fri Nov 25 20:57:38 2022]\u001b[0m\r\n"]
[189.859548, "o", "\u001b[32mFinished job 24.\u001b[0m\r\n"]
[189.859658, "o", "\u001b[32m30 of 193 steps (16%) done\u001b[0m\r\n"]
[189.860397, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[189.861822, "o", "\u001b[32m\u001b[0m\r\n"]
[189.861969, "o", "\u001b[32m[Fri Nov 25 20:57:38 2022]\u001b[0m\r\n\u001b[32mrule qc_reg_to_template:\r\n"]
[189.862128, "o", "    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/CITI168/T1w_head_700um.nii.gz, work/sub-1425/anat/sub-1425_space-CITI168_desc-affine_T1w.nii.gz\r\n    output: hippunfold/sub-1425/qc/sub-1425_from-T1w_to-CITI168_regqc.png\r\n    jobid: 179\r\n    reason: Missing output files: hippunfold/sub-1425/qc/sub-1425_from-T1w_to-CITI168_regqc.png; Input files updated by another job: work/sub-1425/anat/sub-1425_space-CITI168_desc-affine_T1w.nii.gz\r\n    wildcards: subject=1425, native_modality=T1w\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[189.862255, "o", "\u001b[32m\u001b[0m\r\n"]
[189.863514, "o", "\u001b[32m[Fri Nov 25 20:57:38 2022]\u001b[0m"]
[189.863629, "o", "\r\n"]
[189.866402, "o", "\u001b[32mrule convert_template_xfm_ras2itk:\r\n    input: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-CITI168_type-ras_xfm.txt\r\n    output: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-CITI168_type-itk_xfm.txt\r\n    jobid: 23\r\n"]
[189.866528, "o", "    reason: Missing output files: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-CITI168_type-itk_xfm.txt; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-CITI168_type-ras_xfm.txt\r\n    wildcards: subject=1425, reg_suffix=T1w\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[190.099576, "o", "\u001b[32m[Fri Nov 25 20:57:38 2022]\u001b[0m\r\n"]
[190.099655, "o", "\u001b[32mFinished job 23.\u001b[0m\r\n\u001b[32m31 of 193 steps (16%) done\u001b[0m\r\n"]
[190.099981, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[190.100799, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 20:57:38 2022]\u001b[0m\r\n"]
[190.100945, "o", "\u001b[32mrule compose_template_xfm_corobl:\r\n    input: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-CITI168_type-itk_xfm.txt, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/CITI168/CoronalOblique_rigid.txt\r\n    output: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt\r\n    jobid: 22\r\n    reason: Missing output files: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-CITI168_type-itk_xfm.txt\r\n    wildcards: subject=1425\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[190.143036, "o", "\u001b[32m[Fri Nov 25 20:57:38 2022]\u001b[0m\r\n\u001b[32mFinished job 22.\u001b[0m\r\n\u001b[32m32 of 193 steps (17%) done\u001b[0m\r\n"]
[190.143873, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[190.145064, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 20:57:38 2022]\u001b[0m\r\n"]
[190.145219, "o", "\u001b[32mrule warp_t1_to_corobl_crop:\r\n    input: hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/CITI168/T2w_300umCoronalOblique_hemi-R.nii.gz, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/CITI168/CoronalOblique_rigid.txt\r\n    output: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-preproc_T1w.nii.gz\r\n    jobid: 65\r\n"]
[190.145322, "o", "    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-preproc_T1w.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz\r\n    wildcards: subject=1425, hemi=R\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[190.151984, "o", "\u001b[32m\u001b[0m\r\n"]
[190.152149, "o", "\u001b[32m[Fri Nov 25 20:57:38 2022]\u001b[0m\r\n"]
[190.152798, "o", "\u001b[32mrule template_xfm_itk2ras:\r\n    input: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt\r\n    output: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt\r\n    jobid: 38\r\n    reason: Missing output files: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt\r\n    wildcards: subject=1425, native_modality=T1w\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[190.152855, "o", "\u001b[32m\u001b[0m\r\n"]
[190.157143, "o", "\u001b[32m\u001b[0m\r\n"]
[190.161199, "o", "\u001b[32m[Fri Nov 25 20:57:38 2022]\u001b[0m\r\n"]
[190.161347, "o", "\u001b[32mrule warp_t1_to_corobl_crop:\r\n    input: hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/CITI168/T2w_300umCoronalOblique_hemi-L.nii.gz, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/CITI168/CoronalOblique_rigid.txt\r\n    output: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-preproc_T1w.nii.gz\r\n    jobid: 19\r\n"]
[190.161468, "o", "    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-preproc_T1w.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz\r\n    wildcards: subject=1425, hemi=L\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[190.203279, "o", "\u001b[32m[Fri Nov 25 20:57:38 2022]\u001b[0m\r\n"]
[190.203471, "o", "\u001b[32mFinished job 38.\u001b[0m\r\n\u001b[32m33 of 193 steps (17%) done\u001b[0m\r\n"]
[192.38102, "o", "\u001b[32m[Fri Nov 25 20:57:41 2022]\u001b[0m\r\n"]
[192.381181, "o", "\u001b[32mFinished job 65.\u001b[0m\r\n"]
[192.381285, "o", "\u001b[32m34 of 193 steps (18%) done\u001b[0m\r\n"]
[192.38234, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[192.383451, "o", "\u001b[32m\u001b[0m\r\n"]
[192.38357, "o", "\u001b[32m[Fri Nov 25 20:57:41 2022]\u001b[0m\r\n"]
[192.383908, "o", "\u001b[32mrule run_inference:\r\n    input: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-preproc_T1w.nii.gz, /opt/hippunfold_cache/trained_model.3d_fullres.Task101_hcp1200_T1w.nnUNetTrainerV2.model_best.tar\r\n    output: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-R_space-corobl_nnunet.txt\r\n    jobid: 64\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-preproc_T1w.nii.gz\r\n    wildcards: subject=1425, hemi=R\r\n    threads: 16\r\n    resources: tmpdir=/tmp, gpus=0, mem_mb=16000, time=60\u001b[0m\r\n"]
[192.383981, "o", "\u001b[32m\u001b[0m\r\n"]
[192.424108, "o", "\u001b[32m[Fri Nov 25 20:57:41 2022]\u001b[0m\r\n"]
[192.424291, "o", "\u001b[32mFinished job 19.\u001b[0m\r\n\u001b[32m35 of 193 steps (18%) done\u001b[0m\r\n"]
[192.425244, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[192.426436, "o", "\u001b[32m\u001b[0m\r\n"]
[192.426578, "o", "\u001b[32m[Fri Nov 25 20:57:41 2022]\u001b[0m\r\n"]
[192.426893, "o", "\u001b[32mrule lr_flip_t1:\r\n    input: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-preproc_T1w.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-preproc_T1w.nii.gz\r\n    jobid: 18\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-preproc_T1w.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-preproc_T1w.nii.gz\r\n"]
[192.427004, "o", "    wildcards: subject=1425, hemi=L, desc=preproc\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[193.746704, "o", "\u001b[32m[Fri Nov 25 20:57:42 2022]\u001b[0m\r\n\u001b[32mFinished job 18.\u001b[0m\r\n\u001b[32m36 of 193 steps (19%) done\u001b[0m\r\n"]
[193.747571, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[194.359679, "o", "/opt/conda/lib/python3.9/site-packages/nilearn/datasets/__init__.py:93: FutureWarning: Fetchers from the nilearn.datasets module will be updated in version 0.9 to return python strings instead of bytes and Pandas dataframes instead of Numpy arrays.\r\n  warn(\"Fetchers from the nilearn.datasets module will be \"\r\n"]
[198.565502, "o", "\u001b[32m[Fri Nov 25 20:57:47 2022]\u001b[0m\r\n\u001b[32mFinished job 179.\u001b[0m\r\n\u001b[32m37 of 193 steps (19%) done\u001b[0m\r\n"]
[447.613886, "o", "\u001b[32m[Fri Nov 25 21:01:56 2022]\u001b[0m\r\n\u001b[32mFinished job 64.\u001b[0m\r\n\u001b[32m38 of 193 steps (20%) done\u001b[0m\r\n"]
[447.615859, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:01:56 2022]\u001b[0m\r\n"]
[447.616062, "o", "\u001b[32mrule run_inference:\r\n    input: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-preproc_T1w.nii.gz, /opt/hippunfold_cache/trained_model.3d_fullres.Task101_hcp1200_T1w.nnUNetTrainerV2.model_best.tar\r\n    output: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-Lflip_space-corobl_nnunet.txt\r\n    jobid: 17\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-preproc_T1w.nii.gz\r\n    wildcards: subject=1425, hemi=Lflip\r\n    threads: 16\r\n    resources: tmpdir=/tmp, gpus=0, mem_mb=16000, time=60\u001b[0m\r\n"]
[447.616202, "o", "\u001b[32m\u001b[0m\r\n"]
[447.618646, "o", "\u001b[32m\u001b[0m\r\n"]
[447.618813, "o", "\u001b[32m[Fri Nov 25 21:01:56 2022]\u001b[0m\r\n"]
[447.619294, "o", "\u001b[32mrule qc_nnunet_f3d:\r\n    input: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-preproc_T1w.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/CITI168/T1w_300umCoronalOblique_hemi-R.nii.gz\r\n    output: work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-f3d_cpp.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-template_desc-f3d_T1w.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-template_desc-f3d_mask.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-R_space-corobl_desc-f3d_qcreg.txt\r\n    jobid: 192\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-R_space-template_desc-f3d_mask.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-preproc_T1w.nii.gz\r\n    wildcards: subject=1425, hemi=R\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[447.623165, "o", "\u001b[32m\u001b[0m\r\n"]
[447.629211, "o", "\u001b[32m\u001b[0m\r\n"]
[447.629423, "o", "\u001b[32m[Fri Nov 25 21:01:56 2022]\u001b[0m\r\n\u001b[32mrule prep_segs_for_greedy:\r\n    input: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dsegsplit\r\n    jobid: 67\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dsegsplit; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz\r\n    wildcards: prefix=work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[454.134994, "o", "\u001b[32m[Fri Nov 25 21:02:02 2022]\u001b[0m\r\n\u001b[32mFinished job 67.\u001b[0m\r\n\u001b[32m39 of 193 steps (20%) done\u001b[0m\r\n"]
[454.13552, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[519.51032, "o", "\u001b[32m[Fri Nov 25 21:03:08 2022]\u001b[0m\r\n\u001b[32mFinished job 192.\u001b[0m\r\n\u001b[32m40 of 193 steps (21%) done\u001b[0m\r\n"]
[519.511269, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:03:08 2022]\u001b[0m\r\n"]
[519.511476, "o", "\u001b[32mrule qc_nnunet_dice:\r\n"]
[519.511551, "o", "    input: work/sub-1425/anat/sub-1425_hemi-R_space-template_desc-f3d_mask.nii.gz, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/CITI168/Mask_300umCoronalOblique_hemi-R.nii.gz\r\n    output: hippunfold/sub-1425/qc/sub-1425_hemi-R_desc-unetf3d_dice.tsv\r\n    jobid: 191\r\n    reason: Missing output files: hippunfold/sub-1425/qc/sub-1425_hemi-R_desc-unetf3d_dice.tsv; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-template_desc-f3d_mask.nii.gz\r\n    wildcards: subject=1425, hemi=R\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[519.511591, "o", "\u001b[32m\u001b[0m\r\n"]
[520.478279, "o", "\u001b[32m[Fri Nov 25 21:03:09 2022]\u001b[0m\r\n"]
[520.478818, "o", "\u001b[32mFinished job 191.\u001b[0m\r\n"]
[520.478919, "o", "\u001b[32m41 of 193 steps (21%) done\u001b[0m\r\n"]
[520.479259, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[605.460053, "o", "\u001b[32m[Fri Nov 25 21:04:34 2022]\u001b[0m\r\n"]
[605.460294, "o", "\u001b[32mFinished job 17.\u001b[0m\r\n"]
[605.460418, "o", "\u001b[32m42 of 193 steps (22%) done\u001b[0m\r\n"]
[605.462569, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:04:34 2022]\u001b[0m\r\n"]
[605.463221, "o", "\u001b[32mrule prep_segs_for_greedy:\r\n    input: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dsegsplit\r\n    jobid: 27\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dsegsplit; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz\r\n    wildcards: prefix=work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[605.465555, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:04:34 2022]\u001b[0m\r\n"]
[605.470788, "o", "\u001b[32mrule unflip_nnunet_nii:\r\n    input: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-nnunet_dseg.nii.gz\r\n    jobid: 190\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-nnunet_dseg.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz\r\n    wildcards: subject=1425, hemi=L\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[605.470882, "o", "\u001b[32m\u001b[0m\r\n"]
[605.474298, "o", "\u001b[32m\u001b[0m\r\n"]
[605.474457, "o", "\u001b[32m[Fri Nov 25 21:04:34 2022]\u001b[0m\r\n"]
[605.479198, "o", "\u001b[32mrule template_shape_reg:\r\n    input: work/sub-1425/anat/sub-1425_space-template_desc-hipptissue_dsegsplit, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dsegsplit\r\n    output: work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-R_templateshapereg.txt\r\n    jobid: 66\r\n    reason: Missing output files: work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_space-template_desc-hipptissue_dsegsplit, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dsegsplit\r\n    wildcards: subject=1425, hemi=R\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[605.713689, "o", "\u001b[32m[Fri Nov 25 21:04:34 2022]\u001b[0m\r\n"]
[605.713857, "o", "\u001b[32mFinished job 190.\u001b[0m\r\n\u001b[32m43 of 193 steps (22%) done\u001b[0m\r\n"]
[605.714446, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[605.71533, "o", "\u001b[32m\u001b[0m\r\n"]
[605.715516, "o", "\u001b[32m[Fri Nov 25 21:04:34 2022]\u001b[0m\r\n"]
[605.715973, "o", "\u001b[32mrule qc_nnunet_f3d:\r\n    input: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-preproc_T1w.nii.gz, work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-nnunet_dseg.nii.gz, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/CITI168/T1w_300umCoronalOblique_hemi-L.nii.gz\r\n    output: work/sub-1425/warps/sub-1425_hemi-L_space-corobl_desc-f3d_cpp.nii.gz, work/sub-1425/anat/sub-1425_hemi-L_space-template_desc-f3d_T1w.nii.gz, work/sub-1425/anat/sub-1425_hemi-L_space-template_desc-f3d_mask.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-L_space-corobl_desc-f3d_qcreg.txt\r\n    jobid: 189\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-L_space-template_desc-f3d_mask.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-preproc_T1w.nii.gz\r\n    wildcards: subject=1425, hemi=L\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[605.716182, "o", "\u001b[32m\u001b[0m\r\n"]
[611.980909, "o", "\u001b[32m[Fri Nov 25 21:04:40 2022]\u001b[0m\r\n"]
[611.981065, "o", "\u001b[32mFinished job 27.\u001b[0m\r\n"]
[611.981247, "o", "\u001b[32m44 of 193 steps (23%) done\u001b[0m\r\n"]
[611.982226, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[611.983537, "o", "\u001b[32m\u001b[0m\r\n"]
[611.983652, "o", "\u001b[32m[Fri Nov 25 21:04:40 2022]\u001b[0m\r\n"]
[611.983998, "o", "\u001b[32mrule template_shape_reg:\r\n    input: work/sub-1425/anat/sub-1425_space-template_desc-hipptissue_dsegsplit, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dsegsplit\r\n    output: work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-Lflip_templateshapereg.txt\r\n    jobid: 25\r\n    reason: Missing output files: work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dsegsplit, work/sub-1425/anat/sub-1425_space-template_desc-hipptissue_dsegsplit\r\n    wildcards: subject=1425, hemi=Lflip\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[611.984114, "o", "\u001b[32m\u001b[0m\r\n"]
[672.72701, "o", "\u001b[32m[Fri Nov 25 21:05:41 2022]\u001b[0m\r\n\u001b[32mFinished job 189.\u001b[0m\r\n"]
[672.727383, "o", "\u001b[32m45 of 193 steps (23%) done\u001b[0m\r\n"]
[672.727821, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[672.727972, "o", "\r\n"]
[672.728823, "o", "\u001b[32m\u001b[0m"]
[672.72894, "o", "\r\n"]
[672.729216, "o", "\u001b[32m[Fri Nov 25 21:05:41 2022]\u001b[0m"]
[672.729402, "o", "\r\n\u001b[32mrule qc_nnunet_dice:\r\n    input: work/sub-1425/anat/sub-1425_hemi-L_space-template_desc-f3d_mask.nii.gz, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/CITI168/Mask_300umCoronalOblique_hemi-L.nii.gz"]
[672.729705, "o", "\r\n    output: hippunfold/sub-1425/qc/sub-1425_hemi-L_desc-unetf3d_dice.tsv\r\n    jobid: 188\r\n    reason: Missing output files: hippunfold/sub-1425/qc/sub-1425_hemi-L_desc-unetf3d_dice.tsv; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-L_space-template_desc-f3d_mask.nii.gz\r\n    wildcards: subject=1425, hemi=L\r\n"]
[672.7299, "o", "    resources: tmpdir=/tmp\u001b[0m\r\n"]
[672.730208, "o", "\u001b[32m\u001b[0m"]
[672.730317, "o", "\r\n"]
[673.692172, "o", "\u001b[32m[Fri Nov 25 21:05:42 2022]\u001b[0m\r\n"]
[673.692337, "o", "\u001b[32mFinished job 188.\u001b[0m"]
[673.692366, "o", "\r\n"]
[673.692614, "o", "\u001b[32m46 of 193 steps (24%) done\u001b[0m"]
[673.692745, "o", "\r\n"]
[701.380714, "o", "\u001b[32m[Fri Nov 25 21:06:10 2022]\u001b[0m\r\n"]
[701.380999, "o", "\u001b[32mFinished job 66.\u001b[0m\r\n"]
[701.381103, "o", "\u001b[32m47 of 193 steps (24%) done\u001b[0m\r\n"]
[701.382195, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[701.385688, "o", "\u001b[32m\u001b[0m\r\n"]
[701.38583, "o", "\u001b[32m[Fri Nov 25 21:06:10 2022]\u001b[0m\r\n"]
[701.386232, "o", "\u001b[32mrule inject_init_laplace_coords:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/tpl-upenn/tpl-upenn_dir-IO_label-hipp_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-init_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-IO_hemi-R_label-hipp_desc-init_injectcoords.txt\r\n    jobid: 164\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-init_coords.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-14"]
[701.386334, "o", "25_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=R, autotop=hipp\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[701.386436, "o", "\u001b[32m\u001b[0m\r\n"]
[702.77059, "o", "\u001b[32m[Fri Nov 25 21:06:11 2022]\u001b[0m\r\n\u001b[32mFinished job 164.\u001b[0m\r\n\u001b[32m48 of 193 steps (25%) done\u001b[0m\r\n"]
[702.772044, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[702.772458, "o", "\u001b[32m\u001b[0m\r\n"]
[702.772627, "o", "\u001b[32m[Fri Nov 25 21:06:11 2022]\u001b[0m\r\n\u001b[32mrule inject_init_laplace_coords:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/tpl-upenn/tpl-upenn_dir-AP_label-hipp_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-init_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-AP_hemi-R_label-hipp_desc-init_injectcoords.txt\r\n    jobid: 68\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-init_coords.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras"]
[702.772738, "o", "_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    wildcards: subject=1425, dir=AP, hemi=R, autotop=hipp\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[704.102128, "o", "\u001b[32m[Fri Nov 25 21:06:13 2022]\u001b[0m\r\n\u001b[32mFinished job 68.\u001b[0m\r\n\u001b[32m49 of 193 steps (25%) done\u001b[0m\r\n"]
[704.102921, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[704.10346, "o", "\u001b[32m\u001b[0m\r\n"]
[704.103551, "o", "\u001b[32m[Fri Nov 25 21:06:13 2022]\u001b[0m\r\n"]
[704.103668, "o", "\u001b[32mrule inject_init_laplace_coords:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/tpl-upenn/tpl-upenn_dir-PD_label-hipp_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz"]
[704.103767, "o", "\r\n    output: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-hipp_desc-init_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-PD_hemi-R_label-hipp_desc-init_injectcoords.txt\r\n    jobid: 70\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-hipp_desc-init_coords.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    wildcards: subject=1425, dir=PD, hemi=R, autotop=hipp\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[704.103906, "o", "\u001b[32m\u001b[0m\r\n"]
[705.516519, "o", "\u001b[32m[Fri Nov 25 21:06:14 2022]\u001b[0m\r\n\u001b[32mFinished job 70.\u001b[0m\r\n\u001b[32m50 of 193 steps (26%) done\u001b[0m\r\n"]
[705.516848, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[705.517498, "o", "\u001b[32m\u001b[0m\r\n"]
[705.517633, "o", "\u001b[32m[Fri Nov 25 21:06:14 2022]\u001b[0m\r\n"]
[705.519275, "o", "\u001b[32mrule inject_init_laplace_coords:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/tpl-upenn/tpl-upenn_dir-IO_label-dentate_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-IO_hemi-R_label-dentate_desc-init_injectcoords.txt\r\n    jobid: 131\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-dentate_desc-init_coords.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/"]
[705.519435, "o", "warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=R, autotop=dentate\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[706.748689, "o", "\u001b[32m[Fri Nov 25 21:06:15 2022]\u001b[0m\r\n\u001b[32mFinished job 131.\u001b[0m\r\n"]
[706.748955, "o", "\u001b[32m51 of 193 steps (26%) done\u001b[0m\r\n"]
[706.749987, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[706.751374, "o", "\u001b[32m\u001b[0m\r\n"]
[706.751431, "o", "\u001b[32m[Fri Nov 25 21:06:15 2022]\u001b[0m\r\n"]
[706.751775, "o", "\u001b[32mrule laplace_coords_dentate:\r\n    input: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-IO_hemi-R_laplace-dentate.txt\r\n    jobid: 130\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=R\r\n    resources: tmpdir=/tmp, time=30\u001b[0m\r\n"]
[706.751882, "o", "\u001b[32m\u001b[0m\r\n"]
[706.753602, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:06:15 2022]\u001b[0m\r\n"]
[706.753661, "o", "\u001b[32mrule inject_init_laplace_coords:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/tpl-upenn/tpl-upenn_dir-PD_label-dentate_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-PD_hemi-R_label-dentate_desc-init_injectcoords.txt\r\n    jobid: 129\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-dentate_desc-init_coords.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/"]
[706.753833, "o", "warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    wildcards: subject=1425, dir=PD, hemi=R, autotop=dentate\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[706.757699, "o", "\u001b[32m\u001b[0m\r\n"]
[706.768503, "o", "\u001b[32m[Fri Nov 25 21:06:15 2022]\u001b[0m\r\n\u001b[32mFinished job 130.\u001b[0m\r\n"]
[706.768672, "o", "\u001b[32m52 of 193 steps (27%) done\u001b[0m\r\n"]
[706.768921, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[706.930694, "o", "\u001b[32m[Fri Nov 25 21:06:15 2022]\u001b[0m\r\n\u001b[32mFinished job 25.\u001b[0m\r\n\u001b[32m53 of 193 steps (27%) done\u001b[0m\r\n"]
[706.934304, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:06:15 2022]\u001b[0m\r\n"]
[706.934502, "o", "\u001b[32mrule inject_init_laplace_coords:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/tpl-upenn/tpl-upenn_dir-IO_label-hipp_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-hipp_desc-init_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-IO_hemi-Lflip_label-hipp_desc-init_injectcoords.txt\r\n    jobid: 161\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-hipp_desc-init_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz, w"]
[706.934643, "o", "ork/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt\r\n    wildcards: subject=1425, dir=IO, hemi=Lflip, autotop=hipp\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[707.939889, "o", "\u001b[32m[Fri Nov 25 21:06:16 2022]\u001b[0m\r\n"]
[707.940118, "o", "\u001b[32mFinished job 129.\u001b[0m"]
[707.940229, "o", "\r\n"]
[707.940437, "o", "\u001b[32m54 of 193 steps (28%) done\u001b[0m"]
[707.940535, "o", "\r\n"]
[707.941873, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[707.941961, "o", "\r\n"]
[707.943699, "o", "\u001b[32m\u001b[0m"]
[707.943793, "o", "\r\n"]
[707.944008, "o", "\u001b[32m[Fri Nov 25 21:06:16 2022]\u001b[0m"]
[707.944107, "o", "\r\n"]
[707.944442, "o", "\u001b[32mrule inject_init_laplace_coords:"]
[707.944525, "o", "\r\n"]
[707.944926, "o", "    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/tpl-upenn/tpl-upenn_dir-AP_label-hipp_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz"]
[707.945102, "o", "\r\n    output: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-hipp_desc-init_coords.nii.gz"]
[707.945222, "o", "\r\n"]
[707.945297, "o", "    log: logs/sub-1425/sub-1425_dir-AP_hemi-Lflip_label-hipp_desc-init_injectcoords.txt"]
[707.94539, "o", "\r\n"]
[707.945511, "o", "    jobid: 28\r\n"]
[707.945662, "o", "    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-hipp_desc-init_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt"]
[707.945768, "o", "\r\n"]
[707.945857, "o", "    wildcards: subject=1425, dir=AP, hemi=Lflip, autotop=hipp"]
[707.945961, "o", "\r\n    threads: 8"]
[707.946093, "o", "\r\n"]
[707.946188, "o", "    resources: tmpdir=/tmp\u001b[0m"]
[707.946319, "o", "\r\n"]
[707.946485, "o", "\u001b[32m\u001b[0m"]
[707.946584, "o", "\r\n"]
[707.953537, "o", "\u001b[32m\u001b[0m\r\n"]
[707.95371, "o", "\u001b[32m[Fri Nov 25 21:06:16 2022]\u001b[0m\r\n"]
[707.953859, "o", "\u001b[32mrule laplace_coords_dentate:"]
[707.953931, "o", "\r\n    input: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-dentate_desc-init_coords.nii.gz"]
[707.953994, "o", "\r\n"]
[707.954051, "o", "    output: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz"]
[707.954106, "o", "\r\n    log: logs/sub-1425/sub-1425_dir-PD_hemi-R_laplace-dentate.txt"]
[707.954154, "o", "\r\n"]
[707.954207, "o", "    jobid: 128"]
[707.954284, "o", "\r\n"]
[707.954379, "o", "    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n"]
[707.954465, "o", "    wildcards: subject=1425, dir=PD, hemi=R\r\n"]
[707.954531, "o", "    resources: tmpdir=/tmp, time=30\u001b[0m\r\n"]
[707.954681, "o", "\u001b[32m\u001b[0m"]
[707.954745, "o", "\r\n"]
[707.96776, "o", "\u001b[32m[Fri Nov 25 21:06:16 2022]\u001b[0m\r\n"]
[707.967907, "o", "\u001b[32mFinished job 128.\u001b[0m\r\n"]
[707.968097, "o", "\u001b[32m55 of 193 steps (28%) done\u001b[0m"]
[707.968165, "o", "\r\n"]
[707.969067, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[707.969139, "o", "\r\n"]
[708.130255, "o", "\u001b[32m[Fri Nov 25 21:06:17 2022]\u001b[0m\r\n"]
[708.13032, "o", "\u001b[32mFinished job 161.\u001b[0m\r\n"]
[708.130495, "o", "\u001b[32m56 of 193 steps (29%) done\u001b[0m\r\n"]
[708.1318, "o", "\u001b[32m\u001b[0m\r\n"]
[708.131932, "o", "\u001b[32m[Fri Nov 25 21:06:17 2022]\u001b[0m\r\n"]
[708.132086, "o", "\u001b[32mrule inject_init_laplace_coords:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/tpl-upenn/tpl-upenn_dir-PD_label-hipp_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-hipp_desc-init_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-PD_hemi-Lflip_label-hipp_desc-init_injectcoords.txt\r\n    jobid: 31\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-hipp_desc-init_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz, wo"]
[708.132184, "o", "rk/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt\r\n    wildcards: subject=1425, dir=PD, hemi=Lflip, autotop=hipp\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[708.132277, "o", "\u001b[32m\u001b[0m\r\n"]
[709.146389, "o", "\u001b[32m[Fri Nov 25 21:06:18 2022]\u001b[0m\r\n\u001b[32mFinished job 28.\u001b[0m\r\n\u001b[32m57 of 193 steps (30%) done\u001b[0m\r\n"]
[709.1467, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[709.147225, "o", "\u001b[32m\u001b[0m\r\n"]
[709.147368, "o", "\u001b[32m[Fri Nov 25 21:06:18 2022]\u001b[0m\r\n"]
[709.14749, "o", "\u001b[32mrule inject_init_laplace_coords:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/tpl-upenn/tpl-upenn_dir-IO_label-dentate_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-IO_hemi-Lflip_label-dentate_desc-init_injectcoords.txt\r\n    jobid: 113\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-dentate_desc-init_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_ds"]
[709.147611, "o", "eg.nii.gz, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt\r\n    wildcards: subject=1425, dir=IO, hemi=Lflip, autotop=dentate\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[709.311211, "o", "\u001b[32m[Fri Nov 25 21:06:18 2022]\u001b[0m\r\n\u001b[32mFinished job 31.\u001b[0m\r\n"]
[709.311408, "o", "\u001b[32m58 of 193 steps (30%) done\u001b[0m\r\n"]
[709.312359, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[709.313168, "o", "\u001b[32m\u001b[0m\r\n"]
[709.313302, "o", "\u001b[32m[Fri Nov 25 21:06:18 2022]\u001b[0m\r\n"]
[709.313578, "o", "\u001b[32mrule inject_init_laplace_coords:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/tpl-upenn/tpl-upenn_dir-PD_label-dentate_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-PD_hemi-Lflip_label-dentate_desc-init_injectcoords.txt\r\n    jobid: 110\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-dentate_desc-init_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_ds"]
[709.313671, "o", "eg.nii.gz, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt\r\n    wildcards: subject=1425, dir=PD, hemi=Lflip, autotop=dentate\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[709.313741, "o", "\u001b[32m\u001b[0m\r\n"]
[710.338076, "o", "\u001b[32m[Fri Nov 25 21:06:19 2022]\u001b[0m\r\n"]
[710.338399, "o", "\u001b[32mFinished job 113.\u001b[0m"]
[710.338531, "o", "\r\n"]
[710.338867, "o", "\u001b[32m59 of 193 steps (31%) done\u001b[0m"]
[710.338993, "o", "\r\n"]
[710.340198, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[710.340299, "o", "\r\n"]
[710.341966, "o", "\u001b[32m\u001b[0m"]
[710.34207, "o", "\r\n"]
[710.342379, "o", "\u001b[32m[Fri Nov 25 21:06:19 2022]\u001b[0m"]
[710.342498, "o", "\r\n"]
[710.342968, "o", "\u001b[32mrule laplace_coords_dentate:"]
[710.343057, "o", "\r\n"]
[710.343151, "o", "    input: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-dentate_desc-init_coords.nii.gz"]
[710.343277, "o", "\r\n"]
[710.343436, "o", "    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-dentate_desc-laplace_coords.nii.gz"]
[710.343883, "o", "\r\n"]
[710.343964, "o", "    log: logs/sub-1425/sub-1425_dir-IO_hemi-Lflip_laplace-dentate.txt"]
[710.34404, "o", "\r\n"]
[710.344121, "o", "    jobid: 112"]
[710.344175, "o", "\r\n"]
[710.344246, "o", "    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-dentate_desc-init_coords.nii.gz"]
[710.344305, "o", "\r\n"]
[710.344363, "o", "    wildcards: subject=1425, dir=IO, hemi=Lflip"]
[710.344417, "o", "\r\n"]
[710.344472, "o", "    resources: tmpdir=/tmp, time=30\u001b[0m"]
[710.34454, "o", "\r\n"]
[710.344697, "o", "\u001b[32m\u001b[0m"]
[710.344793, "o", "\r\n"]
[710.345921, "o", "\u001b[32m\u001b[0m"]
[710.346004, "o", "\r\n"]
[710.349076, "o", "\u001b[32m[Fri Nov 25 21:06:19 2022]\u001b[0m\r\n"]
[710.349292, "o", "\u001b[32mrule inject_init_laplace_coords:"]
[710.349393, "o", "\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/tpl-upenn/tpl-upenn_dir-AP_label-dentate_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz"]
[710.349487, "o", "\r\n    output: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-dentate_desc-init_coords.nii.gz"]
[710.349571, "o", "\r\n    log: logs/sub-1425/sub-1425_dir-AP_hemi-Lflip_label-dentate_desc-init_injectcoords.txt"]
[710.349649, "o", "\r\n"]
[710.349721, "o", "    jobid: 107\r\n"]
[710.349809, "o", "    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-dentate_desc-init_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt\r\n"]
[710.3499, "o", "    wildcards: subject=1425, dir=AP, hemi=Lflip, autotop=dentate\r\n"]
[710.34998, "o", "    threads: 8\r\n"]
[710.350052, "o", "    resources: tmpdir=/tmp\u001b[0m\r\n"]
[710.350147, "o", "\u001b[32m\u001b[0m"]
[710.350224, "o", "\r\n"]
[710.360777, "o", "\u001b[32m[Fri Nov 25 21:06:19 2022]\u001b[0m\r\n"]
[710.360921, "o", "\u001b[32mFinished job 112.\u001b[0m"]
[710.361001, "o", "\r\n"]
[710.361125, "o", "\u001b[32m60 of 193 steps (31%) done\u001b[0m"]
[710.361201, "o", "\r\n"]
[710.361639, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[710.36172, "o", "\r\n"]
[710.362467, "o", "\u001b[32m\u001b[0m"]
[710.362555, "o", "\r\n"]
[710.362694, "o", "\u001b[32m[Fri Nov 25 21:06:19 2022]\u001b[0m"]
[710.362776, "o", "\r\n"]
[710.362949, "o", "\u001b[32mrule unflip_coords:"]
[710.363035, "o", "\r\n"]
[710.363132, "o", "    input: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n"]
[710.363225, "o", "    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n"]
[710.363315, "o", "    jobid: 111\r\n"]
[710.363406, "o", "    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n"]
[710.363508, "o", "    wildcards: subject=1425, dir=IO, hemi=L, autotop=dentate, desc=laplace"]
[710.363829, "o", "\r\n"]
[710.363904, "o", "    resources: tmpdir=/tmp\u001b[0m"]
[710.363951, "o", "\r\n"]
[710.364063, "o", "\u001b[32m\u001b[0m"]
[710.364117, "o", "\r\n"]
[710.520058, "o", "\u001b[32m[Fri Nov 25 21:06:19 2022]\u001b[0m\r\n"]
[710.520215, "o", "\u001b[32mFinished job 110.\u001b[0m\r\n"]
[710.520477, "o", "\u001b[32m61 of 193 steps (32%) done\u001b[0m\r\n"]
[710.521462, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[710.522908, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:06:19 2022]\u001b[0m\r\n"]
[710.523525, "o", "\u001b[32mrule template_shape_inject:\r\n    input: work/sub-1425/anat/sub-1425_space-template_desc-hipptissue_dseg.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-inject_dseg.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-Lflip_templateshapeinject.txt\r\n    jobid: 15\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-inject_dseg.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-Lflip_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-142"]
[710.523632, "o", "5/anat/sub-1425_space-template_desc-hipptissue_dseg.nii.gz\r\n    wildcards: subject=1425, hemi=Lflip\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[710.526017, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:06:19 2022]\u001b[0m\r\n"]
[710.526501, "o", "\u001b[32mrule laplace_coords_dentate:\r\n    input: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-PD_hemi-Lflip_laplace-dentate.txt\r\n    jobid: 109\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n    wildcards: subject=1425, dir=PD, hemi=Lflip\r\n    resources: tmpdir=/tmp, time=30\u001b[0m"]
[710.529655, "o", "\r\n"]
[710.530047, "o", "\u001b[32m\u001b[0m\r\n"]
[710.543752, "o", "\u001b[32m[Fri Nov 25 21:06:19 2022]\u001b[0m\r\n\u001b[32mFinished job 109.\u001b[0m\r\n"]
[710.543921, "o", "\u001b[32m62 of 193 steps (32%) done\u001b[0m\r\n"]
[710.544574, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[710.54553, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:06:19 2022]\u001b[0m\r\n"]
[710.545752, "o", "\u001b[32mrule unflip_coords:\r\n    input: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    jobid: 108\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=PD, hemi=L, autotop=dentate, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[710.545882, "o", "\u001b[32m\u001b[0m\r\n"]
[710.656769, "o", "\u001b[32m[Fri Nov 25 21:06:19 2022]\u001b[0m\r\n\u001b[32mFinished job 111.\u001b[0m\r\n\u001b[32m63 of 193 steps (33%) done\u001b[0m\r\n"]
[710.657091, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[710.838686, "o", "\u001b[32m[Fri Nov 25 21:06:19 2022]\u001b[0m\r\n\u001b[32mFinished job 108.\u001b[0m\r\n\u001b[32m64 of 193 steps (33%) done\u001b[0m\r\n"]
[711.589145, "o", "\u001b[32m[Fri Nov 25 21:06:20 2022]\u001b[0m\r\n\u001b[32mFinished job 107.\u001b[0m\r\n\u001b[32m65 of 193 steps (34%) done\u001b[0m\r\n"]
[711.590372, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:06:20 2022]\u001b[0m\r\n"]
[711.5905, "o", "\u001b[32mrule laplace_coords_dentate:\r\n    input: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-AP_hemi-Lflip_laplace-dentate.txt\r\n    jobid: 106\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n    wildcards: subject=1425, dir=AP, hemi=Lflip\r\n    resources: tmpdir=/tmp, time=30\u001b[0m"]
[711.590605, "o", "\r\n"]
[711.590685, "o", "\u001b[32m\u001b[0m\r\n"]
[711.592232, "o", "\u001b[32m\u001b[0m\r\n"]
[711.595458, "o", "\u001b[32m[Fri Nov 25 21:06:20 2022]\u001b[0m\r\n"]
[711.595673, "o", "\u001b[32mrule inject_init_laplace_coords:\r\n    input: /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/tpl-upenn/tpl-upenn_dir-AP_label-dentate_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-AP_hemi-R_label-dentate_desc-init_injectcoords.txt\r\n    jobid: 127\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-dentate_desc-init_coords.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/"]
[711.595782, "o", "warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    wildcards: subject=1425, dir=AP, hemi=R, autotop=dentate\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[711.604541, "o", "\u001b[32m[Fri Nov 25 21:06:20 2022]\u001b[0m\r\n\u001b[32mFinished job 106.\u001b[0m\r\n"]
[711.604645, "o", "\u001b[32m66 of 193 steps (34%) done\u001b[0m\r\n"]
[711.605194, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[711.606017, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:06:20 2022]\u001b[0m\r\n"]
[711.606165, "o", "\u001b[32mrule unflip_coords:\r\n    input: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    jobid: 105\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=AP, hemi=L, autotop=dentate, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m"]
[711.606252, "o", "\r\n\u001b[32m\u001b[0m\r\n"]
[711.925725, "o", "\u001b[32m[Fri Nov 25 21:06:20 2022]\u001b[0m\r\n\u001b[32mFinished job 105.\u001b[0m\r\n\u001b[32m67 of 193 steps (35%) done\u001b[0m\r\n"]
[711.926037, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[711.926764, "o", "\u001b[32m\u001b[0m\r\n"]
[711.926851, "o", "\u001b[32m[Fri Nov 25 21:06:20 2022]\u001b[0m\r\n"]
[711.926988, "o", "\u001b[32mrule create_native_coord_ref:\r\n    input: work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_hemi-L_space-corobl_label-dentate_refcoords.nii.gz\r\n    jobid: 114\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_hemi-L_space-corobl_label-dentate_refcoords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, hemi=L, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[711.927061, "o", "\u001b[32m\u001b[0m\r\n"]
[712.655579, "o", "\u001b[32m[Fri Nov 25 21:06:21 2022]\u001b[0m\r\n"]
[712.655733, "o", "\u001b[32mFinished job 114.\u001b[0m\r\n"]
[712.655886, "o", "\u001b[32m68 of 193 steps (35%) done\u001b[0m"]
[712.65596, "o", "\r\n"]
[712.656391, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[712.656494, "o", "\r\n"]
[712.65726, "o", "\u001b[32m\u001b[0m"]
[712.65733, "o", "\r\n"]
[712.657429, "o", "\u001b[32m[Fri Nov 25 21:06:21 2022]\u001b[0m"]
[712.657502, "o", "\r\n"]
[712.657696, "o", "\u001b[32mrule create_warps_dentate:"]
[712.657768, "o", "\r\n"]
[712.657844, "o", "    input: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz, work/sub-1425/coords/sub-1425_space-unfold_label-dentate_refcoords.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_hemi-L_space-corobl_label-dentate_refcoords.nii.gz"]
[712.657903, "o", "\r\n"]
[712.657962, "o", "    output: work/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-corobl_to-unfold_mode-surface_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-unfold_to-corobl_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-corobl_to-unfold_mode-image_xfm.nii.gz"]
[712.658006, "o", "\r\n"]
[712.65809, "o", "    log: logs/sub-1425/sub-1425_hemi-L_create_warps-dentate.txt"]
[712.658142, "o", "\r\n"]
[712.658195, "o", "    jobid: 102\r\n"]
[712.658289, "o", "    reason: Missing output files: work/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-corobl_to-unfold_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-unfold_to-corobl_mode-image_xfm.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_space-unfold_label-dentate_refcoords.nii.gz, work/sub-1425/coords/sub-1425_hemi-L_space-corobl_label-dentate_refcoords.nii.gz"]
[712.658518, "o", "\r\n"]
[712.658598, "o", "    wildcards: subject=1425, hemi=L"]
[712.65866, "o", "\r\n    resources: tmpdir=/tmp, mem_mb=16000\u001b[0m"]
[712.658722, "o", "\r\n"]
[712.658845, "o", "\u001b[32m\u001b[0m"]
[712.658915, "o", "\r\n"]
[712.882159, "o", "\u001b[32m[Fri Nov 25 21:06:21 2022]\u001b[0m\r\n"]
[712.882653, "o", "\u001b[32mFinished job 127.\u001b[0m\r\n"]
[712.883062, "o", "\u001b[32m69 of 193 steps (36%) done\u001b[0m\r\n"]
[712.884023, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[712.885557, "o", "\u001b[32m\u001b[0m\r\n"]
[712.885847, "o", "\u001b[32m[Fri Nov 25 21:06:21 2022]\u001b[0m\r\n"]
[712.886383, "o", "\u001b[32mrule template_shape_inject:\r\n    input: work/sub-1425/anat/sub-1425_space-template_desc-hipptissue_dseg.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-inject_dseg.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-R_templateshapeinject.txt\r\n    jobid: 63\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-inject_dseg.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-moments_from-template_to-subject_type-ras_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-corobl_desc-greedy_from-template_to-subject_xfm.nii.gz, work/sub-1425/anat/sub-1425_space-template_desc-"]
[712.886462, "o", "hipptissue_dseg.nii.gz\r\n    wildcards: subject=1425, hemi=R\r\n    threads: 8\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[712.886708, "o", "\u001b[32m\u001b[0m\r\n"]
[712.892434, "o", "\u001b[32m\u001b[0m\r\n"]
[712.892543, "o", "\u001b[32m[Fri Nov 25 21:06:21 2022]\u001b[0m\r\n"]
[712.892867, "o", "\u001b[32mrule laplace_coords_dentate:\r\n    input: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-AP_hemi-R_laplace-dentate.txt\r\n    jobid: 126\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-dentate_desc-init_coords.nii.gz\r\n    wildcards: subject=1425, dir=AP, hemi=R\r\n    resources: tmpdir=/tmp, time=30\u001b[0m\r\n"]
[712.892997, "o", "\u001b[32m\u001b[0m\r\n"]
[712.90331, "o", "\u001b[32m[Fri Nov 25 21:06:21 2022]\u001b[0m\r\n"]
[712.903456, "o", "\u001b[32mFinished job 126.\u001b[0m\r\n"]
[712.903622, "o", "\u001b[32m70 of 193 steps (36%) done\u001b[0m\r\n"]
[712.904175, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[712.905025, "o", "\u001b[32m\u001b[0m\r\n"]
[712.905163, "o", "\u001b[32m[Fri Nov 25 21:06:21 2022]\u001b[0m\r\n"]
[712.90554, "o", "\u001b[32mrule create_native_coord_ref:\r\n    input: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_hemi-R_space-corobl_label-dentate_refcoords.nii.gz\r\n    jobid: 132\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_hemi-R_space-corobl_label-dentate_refcoords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, hemi=R, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[712.905659, "o", "\u001b[32m\u001b[0m\r\n"]
[713.709525, "o", "\u001b[32m[Fri Nov 25 21:06:22 2022]\u001b[0m\r\n\u001b[32mFinished job 132.\u001b[0m\r\n\u001b[32m71 of 193 steps (37%) done\u001b[0m\r\n"]
[713.710466, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[713.711302, "o", "\u001b[32m\u001b[0m\r\n"]
[713.711391, "o", "\u001b[32m[Fri Nov 25 21:06:22 2022]\u001b[0m\r\n"]
[713.711671, "o", "\u001b[32mrule create_warps_dentate:\r\n    input: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz, work/sub-1425/coords/sub-1425_space-unfold_label-dentate_refcoords.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_hemi-R_space-corobl_label-dentate_refcoords.nii.gz\r\n    output: work/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-corobl_to-unfold_mode-surface_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-unfold_to-corobl_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-corobl_to-unfold_mode-image_xfm.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-R_create_warps-d"]
[713.711797, "o", "entate.txt\r\n    jobid: 125\r\n    reason: Missing output files: work/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-corobl_to-unfold_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-unfold_to-corobl_mode-image_xfm.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_hemi-R_space-corobl_label-dentate_refcoords.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_space-unfold_label-dentate_refcoords.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, hemi=R\r\n    resources: tmpdir=/tmp, mem_mb=16000\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[714.311944, "o", "\u001b[32m[Fri Nov 25 21:06:23 2022]\u001b[0m\r\n\u001b[32mFinished job 15.\u001b[0m\r\n\u001b[32m72 of 193 steps (37%) done\u001b[0m\r\n"]
[714.312271, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[714.312964, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:06:23 2022]\u001b[0m\r\n"]
[714.313182, "o", "\u001b[32mrule reinsert_subject_labels:\r\n    input: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-inject_dseg.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-postproc_dseg.nii.gz\r\n    jobid: 14\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-postproc_dseg.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-inject_dseg.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-nnunet_dseg.nii.gz\r\n    wildcards: subject=1425, hemi=Lflip\r\n    resources: tmpdir=/tmp\u001b[0m"]
[714.313283, "o", "\r\n\u001b[32m\u001b[0m\r\n"]
[714.71195, "o", "\u001b[32m[Fri Nov 25 21:06:23 2022]\u001b[0m\r\n\u001b[32mFinished job 14.\u001b[0m\r\n\u001b[32m73 of 193 steps (38%) done\u001b[0m\r\n"]
[714.71242, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[714.713627, "o", "\u001b[32m\u001b[0m"]
[714.713706, "o", "\r\n"]
[714.71383, "o", "\u001b[32m[Fri Nov 25 21:06:23 2022]\u001b[0m"]
[714.713907, "o", "\r\n"]
[714.714071, "o", "\u001b[32mrule laplace_coords_hipp:"]
[714.714132, "o", "\r\n"]
[714.714187, "o", "    input: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-postproc_dseg.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-hipp_desc-init_coords.nii.gz"]
[714.714245, "o", "\r\n"]
[714.714323, "o", "    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-hipp_desc-laplace_coords.nii.gz"]
[714.714399, "o", "\r\n"]
[714.714458, "o", "    log: logs/sub-1425/sub-1425_dir-IO_hemi-Lflip_laplace-hipp.txt\r\n"]
[714.714522, "o", "    jobid: 160"]
[714.714578, "o", "\r\n"]
[714.714625, "o", "    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-postproc_dseg.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-hipp_desc-init_coords.nii.gz"]
[714.714685, "o", "\r\n"]
[714.714751, "o", "    wildcards: subject=1425, dir=IO, hemi=Lflip"]
[714.714809, "o", "\r\n"]
[714.714858, "o", "    resources: tmpdir=/tmp, time=30\u001b[0m"]
[714.714912, "o", "\r\n"]
[714.71503, "o", "\u001b[32m\u001b[0m"]
[714.71508, "o", "\r\n"]
[714.716393, "o", "\u001b[32m[Fri Nov 25 21:06:23 2022]\u001b[0m"]
[714.71648, "o", "\r\n"]
[714.717824, "o", "\u001b[32mrule unflip_postproc:\r\n"]
[714.717953, "o", "    input: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-postproc_dseg.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-postproc_dseg.nii.gz"]
[714.718043, "o", "\r\n    jobid: 141\r\n"]
[714.718239, "o", "    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-postproc_dseg.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-postproc_dseg.nii.gz\r\n    wildcards: subject=1425, hemi=L"]
[714.718327, "o", "\r\n    resources: tmpdir=/tmp\u001b[0m"]
[714.719079, "o", "\r\n\u001b[32m\u001b[0m\r\n"]
[714.723179, "o", "\u001b[32m\u001b[0m\r\n"]
[714.726225, "o", "\u001b[32m[Fri Nov 25 21:06:23 2022]\u001b[0m\r\n"]
[714.726489, "o", "\u001b[32mrule laplace_coords_hipp:"]
[714.726564, "o", "\r\n"]
[714.726632, "o", "    input: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-postproc_dseg.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-hipp_desc-init_coords.nii.gz\r\n"]
[714.726706, "o", "    output: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-hipp_desc-laplace_coords.nii.gz"]
[714.726805, "o", "\r\n    log: logs/sub-1425/sub-1425_dir-AP_hemi-Lflip_laplace-hipp.txt\r\n"]
[714.726918, "o", "    jobid: 13\r\n"]
[714.727035, "o", "    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-hipp_desc-init_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-postproc_dseg.nii.gz"]
[714.727067, "o", "\r\n    wildcards: subject=1425, dir=AP, hemi=Lflip"]
[714.727147, "o", "\r\n"]
[714.727222, "o", "    resources: tmpdir=/tmp, time=30\u001b[0m\r\n"]
[714.727347, "o", "\u001b[32m\u001b[0m"]
[714.7274, "o", "\r\n"]
[714.729086, "o", "\u001b[32m[Fri Nov 25 21:06:23 2022]\u001b[0m"]
[714.729167, "o", "\r\n"]
[714.73116, "o", "\u001b[32mrule laplace_coords_hipp:\r\n"]
[714.731241, "o", "    input: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-postproc_dseg.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-hipp_desc-init_coords.nii.gz\r\n"]
[714.731318, "o", "    output: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n"]
[714.73142, "o", "    log: logs/sub-1425/sub-1425_dir-PD_hemi-Lflip_laplace-hipp.txt\r\n"]
[714.731524, "o", "    jobid: 30\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-postproc_dseg.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-hipp_desc-init_coords.nii.gz"]
[714.73161, "o", "\r\n"]
[714.731682, "o", "    wildcards: subject=1425, dir=PD, hemi=Lflip"]
[714.731761, "o", "\r\n    resources: tmpdir=/tmp, time=30\u001b[0m"]
[714.732261, "o", "\r\n"]
[714.732693, "o", "\u001b[32m\u001b[0m"]
[714.732787, "o", "\r\n"]
[714.744598, "o", "\u001b[32m\u001b[0m\r\n"]
[714.744805, "o", "\u001b[32m[Fri Nov 25 21:06:23 2022]\u001b[0m"]
[714.744925, "o", "\r\n"]
[714.745727, "o", "\u001b[32mrule prep_equivolume_coords:"]
[714.745813, "o", "\r\n"]
[714.745885, "o", "    input: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-postproc_dseg.nii.gz"]
[714.745945, "o", "\r\n"]
[714.746037, "o", "    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_desc-all_mask.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_desc-SRLM_mask.nii.gz"]
[714.746066, "o", "\r\n"]
[714.746176, "o", "    log: logs/sub-1425/sub-1425_dir-IO_hemi-Lflip_binarize.txt"]
[714.746252, "o", "\r\n"]
[714.746321, "o", "    jobid: 34\r\n"]
[714.746413, "o", "    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_desc-SRLM_mask.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_desc-all_mask.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-Lflip_space-corobl_desc-postproc_dseg.nii.gz"]
[714.746508, "o", "\r\n"]
[714.74659, "o", "    wildcards: subject=1425, dir=IO, hemi=Lflip"]
[714.74665, "o", "\r\n"]
[714.746712, "o", "    resources: tmpdir=/tmp\u001b[0m"]
[714.746779, "o", "\r\n"]
[714.747015, "o", "\u001b[32m\u001b[0m"]
[714.747093, "o", "\r\n"]
[715.021959, "o", "\u001b[32m[Fri Nov 25 21:06:24 2022]\u001b[0m\r\n"]
[715.022104, "o", "\u001b[32mFinished job 141.\u001b[0m\r\n"]
[715.022517, "o", "\u001b[32m74 of 193 steps (38%) done\u001b[0m"]
[715.022647, "o", "\r\n"]
[715.693417, "o", "\u001b[32m[Fri Nov 25 21:06:24 2022]\u001b[0m\r\n"]
[715.693601, "o", "\u001b[32mFinished job 34.\u001b[0m"]
[715.693712, "o", "\r\n"]
[715.693829, "o", "\u001b[32m75 of 193 steps (39%) done\u001b[0m\r\n"]
[715.694274, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[715.694362, "o", "\r\n"]
[715.695203, "o", "\u001b[32m\u001b[0m"]
[715.695338, "o", "\r\n"]
[715.695461, "o", "\u001b[32m[Fri Nov 25 21:06:24 2022]\u001b[0m"]
[715.695554, "o", "\r\n"]
[715.695712, "o", "\u001b[32mrule equivolume_coords:"]
[715.69588, "o", "\r\n    input: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_desc-all_mask.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_desc-SRLM_mask.nii.gz"]
[715.695964, "o", "\r\n    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-hipp_desc-equivol_coords.nii.gz\r\n"]
[715.696029, "o", "    log: logs/sub-1425/sub-1425_dir-IO_hemi-Lflip_equivolume.txt"]
[715.696095, "o", "\r\n"]
[715.696146, "o", "    jobid: 33"]
[715.696229, "o", "\r\n"]
[715.696298, "o", "    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-hipp_desc-equivol_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_desc-SRLM_mask.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_desc-all_mask.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=Lflip\r\n"]
[715.696446, "o", "    resources: tmpdir=/tmp, time=30\u001b[0m"]
[715.696593, "o", "\r\n"]
[715.696743, "o", "\u001b[32m\u001b[0m"]
[715.697241, "o", "\r\n"]
[716.821543, "o", "\u001b[32m[Fri Nov 25 21:06:25 2022]\u001b[0m\r\n\u001b[32mFinished job 63.\u001b[0m\r\n\u001b[32m76 of 193 steps (39%) done\u001b[0m\r\n"]
[716.821932, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[716.822568, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:06:25 2022]\u001b[0m\r\n"]
[716.82268, "o", "\u001b[32mrule reinsert_subject_labels:\r\n    input: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-inject_dseg.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-postproc_dseg.nii.gz\r\n    jobid: 62\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-postproc_dseg.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-nnunet_dseg.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-inject_dseg.nii.gz\r\n"]
[716.822779, "o", "    wildcards: subject=1425, hemi=R\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[717.009395, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n\u001b[32mFinished job 102.\u001b[0m\r\n\u001b[32m77 of 193 steps (40%) done\u001b[0m\r\n"]
[717.010004, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[717.01099, "o", "\u001b[32m\u001b[0m\r\n"]
[717.01111, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.01144, "o", "\u001b[32mrule compose_warps_native_to_unfold:\r\n    input: work/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-corobl_to-unfold_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt\r\n    output: hippunfold/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-T1w_to-unfold_mode-image_xfm.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-L_label-dentate_from-T1w_to-unfold_mode-image_composexfm.txt\r\n    jobid: 171\r\n    reason: Missing output files: hippunfold/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-T1w_to-unfold_mode-image_xfm.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-corobl_to-unfold_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz\r\n    wildcards: subject=1425, hemi=L, autotop=dentate, native_modality=T1w\r\n  "]
[717.011545, "o", "  resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[717.016181, "o", "\u001b[32m\u001b[0m\r\n"]
[717.016377, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.016764, "o", "\u001b[32mrule warp_gii_unfold2native:\r\n    input: work/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-dentate_desc-constrainbbox_midthickness.surf.gii\r\n    output: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-dentate_desc-nonancorrect_midthickness.surf.gii\r\n    jobid: 101\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-dentate_desc-nonancorrect_midthickness.surf.gii; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-dentate_desc-constrainbbox_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=dentate, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[717.016843, "o", "\u001b[32m\u001b[0m\r\n"]
[717.128944, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n\u001b[32mFinished job 101.\u001b[0m\r\n"]
[717.129134, "o", "\u001b[32m78 of 193 steps (40%) done\u001b[0m\r\n"]
[717.129763, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[717.130847, "o", "\u001b[32m\u001b[0m\r\n"]
[717.130959, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.131119, "o", "\u001b[32mrule correct_nan_vertices:\r\n    input: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-dentate_desc-nonancorrect_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    jobid: 100\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-dentate_midthickness.surf.gii; Input files updated by another job: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-dentate_desc-nonancorrect_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=dentate, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[717.13122, "o", "\u001b[32m\u001b[0m\r\n"]
[717.214644, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n\u001b[32mFinished job 62.\u001b[0m\r\n\u001b[32m79 of 193 steps (41%) done\u001b[0m\r\n"]
[717.215236, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[717.217067, "o", "\u001b[32m\u001b[0m\r\n"]
[717.217167, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.217373, "o", "\u001b[32mrule laplace_coords_hipp:\r\n    input: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-postproc_dseg.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-init_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-IO_hemi-R_laplace-hipp.txt\r\n    jobid: 163\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-init_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-postproc_dseg.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=R\r\n    resources: tmpdir=/tmp, time=30\u001b[0m\r\n"]
[717.217464, "o", "\u001b[32m\u001b[0m\r\n"]
[717.219062, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.219247, "o", "\u001b[32mrule laplace_coords_hipp:\r\n    input: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-postproc_dseg.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-init_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-AP_hemi-R_laplace-hipp.txt\r\n    jobid: 61\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-init_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-postproc_dseg.nii.gz\r\n    wildcards: subject=1425, dir=AP, hemi=R\r\n    resources: tmpdir=/tmp, time=30\u001b[0m\r\n"]
[717.219332, "o", "\u001b[32m\u001b[0m\r\n"]
[717.231679, "o", "\u001b[32m\u001b[0m\r\n"]
[717.23186, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.232024, "o", "\u001b[32mrule laplace_coords_hipp:\r\n    input: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-postproc_dseg.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-hipp_desc-init_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-PD_hemi-R_laplace-hipp.txt\r\n    jobid: 69\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-hipp_desc-init_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-postproc_dseg.nii.gz\r\n    wildcards: subject=1425, dir=PD, hemi=R\r\n    resources: tmpdir=/tmp, time=30\u001b[0m\r\n"]
[717.232364, "o", "\u001b[32m\u001b[0m\r\n"]
[717.235, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n\u001b[32mrule prep_equivolume_coords:\r\n    input: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-postproc_dseg.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_desc-all_mask.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_desc-SRLM_mask.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-IO_hemi-R_binarize.txt\r\n    jobid: 72\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_desc-SRLM_mask.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_desc-all_mask.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-postproc_dseg.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=R\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[717.23521, "o", "\u001b[32m\u001b[0m\r\n"]
[717.507241, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.507429, "o", "\u001b[32mFinished job 171.\u001b[0m\r\n\u001b[32m80 of 193 steps (41%) done\u001b[0m\r\n"]
[717.680991, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n\u001b[32mFinished job 100.\u001b[0m\r\n\u001b[32m81 of 193 steps (42%) done\u001b[0m\r\n"]
[717.681334, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[717.682095, "o", "\u001b[32m\u001b[0m\r\n"]
[717.682242, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.682401, "o", "\u001b[32mrule warp_gii_to_native:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-dentate_midthickness.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    jobid: 99\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-dentate_midthickness.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt\r\n    wildcards: subject=1425, hemi=L, native_modality=T1w, density=0p5mm, autotop=dentate, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[717.682543, "o", "\u001b[32m\u001b[0m\r\n"]
[717.736494, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.736554, "o", "\u001b[32mFinished job 99.\u001b[0m\r\n"]
[717.736721, "o", "\u001b[32m82 of 193 steps (42%) done\u001b[0m\r\n"]
[717.737125, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[717.738288, "o", "\u001b[32m\u001b[0m\r\n"]
[717.738402, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.738638, "o", "\u001b[32mrule calculate_surface_area:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_surfarea.shape.gii\r\n    jobid: 98\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_surfarea.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=L, space=T1w, density=0p5mm, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m"]
[717.738721, "o", "\r\n\u001b[32m\u001b[0m\r\n"]
[717.740124, "o", "\u001b[32m\u001b[0m\r\n"]
[717.743386, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.743589, "o", "\u001b[32mrule qc_subfield_surf:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/qc/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_desc-subfields_midthickness.surf.png\r\n    jobid: 183\r\n    reason: Missing output files: hippunfold/sub-1425/qc/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_desc-subfields_midthickness.surf.png; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=L, ref_spaces=T1w, density=0p5mm, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m"]
[717.743959, "o", "\r\n\u001b[32m\u001b[0m\r\n"]
[717.752707, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.752966, "o", "\u001b[32mrule smooth_surface:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_desc-smoothed_midthickness.surf.gii\r\n    jobid: 118\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_desc-smoothed_midthickness.surf.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=L, space=T1w, density=0p5mm, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[717.784761, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.784937, "o", "\u001b[32mFinished job 98.\u001b[0m\r\n\u001b[32m83 of 193 steps (43%) done\u001b[0m\r\n"]
[717.785965, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[717.786968, "o", "\u001b[32m\u001b[0m\r\n"]
[717.78712, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.787388, "o", "\u001b[32mrule calculate_gyrification:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_surfarea.shape.gii, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_dentate/tpl-avg_space-unfold_den-0p5mm_surfarea.shape.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_gyrification.shape.gii\r\n    log: logs/sub-1425/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_calcgyrification.txt\r\n"]
[717.787524, "o", "    jobid: 97\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_gyrification.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_surfarea.shape.gii\r\n    wildcards: subject=1425, hemi=L, space=T1w, density=0p5mm, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[717.848337, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n\u001b[32mFinished job 118.\u001b[0m\r\n"]
[717.848493, "o", "\u001b[32m84 of 193 steps (44%) done\u001b[0m\r\n"]
[717.849026, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[717.849941, "o", "\u001b[32m\u001b[0m\r\n"]
[717.850052, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.850249, "o", "\u001b[32mrule calculate_curvature_from_surface:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_desc-smoothed_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_curvature.shape.gii\r\n    jobid: 117\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_curvature.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_desc-smoothed_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=L, space=T1w, density=0p5mm, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[717.850402, "o", "\u001b[32m\u001b[0m\r\n"]
[717.858243, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n"]
[717.858414, "o", "\u001b[32mFinished job 97.\u001b[0m\r\n"]
[717.858506, "o", "\u001b[32m85 of 193 steps (44%) done\u001b[0m\r\n"]
[717.89538, "o", "\u001b[32m[Fri Nov 25 21:06:26 2022]\u001b[0m\r\n\u001b[32mFinished job 117.\u001b[0m\r\n"]
[717.895521, "o", "\u001b[32m86 of 193 steps (45%) done\u001b[0m\r\n"]
[718.086338, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n"]
[718.086506, "o", "\u001b[32mFinished job 72.\u001b[0m\r\n\u001b[32m87 of 193 steps (45%) done\u001b[0m\r\n"]
[718.086698, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[718.087523, "o", "\u001b[32m\u001b[0m\r\n"]
[718.087913, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n"]
[718.088217, "o", "\u001b[32mrule equivolume_coords:\r\n    input: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_desc-all_mask.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_desc-SRLM_mask.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-equivol_coords.nii.gz\r\n    log: logs/sub-1425/sub-1425_dir-IO_hemi-R_equivolume.txt\r\n    jobid: 71\r\n"]
[718.088315, "o", "    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-equivol_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_desc-SRLM_mask.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_desc-all_mask.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=R\r\n    resources: tmpdir=/tmp, time=30\u001b[0m\r\n"]
[718.088406, "o", "\u001b[32m\u001b[0m\r\n"]
[718.226232, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n"]
[718.226403, "o", "\u001b[32mFinished job 125.\u001b[0m\r\n"]
[718.226489, "o", "\u001b[32m88 of 193 steps (46%) done\u001b[0m\r\n"]
[718.226986, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[718.228585, "o", "\u001b[32m\u001b[0m\r\n"]
[718.228858, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n"]
[718.229071, "o", "\u001b[32mrule warp_gii_unfold2native:\r\n    input: work/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-dentate_desc-constrainbbox_midthickness.surf.gii\r\n    output: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-dentate_desc-nonancorrect_midthickness.surf.gii\r\n    jobid: 124\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-dentate_desc-nonancorrect_midthickness.surf.gii; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-dentate_desc-constrainbbox_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=dentate, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[718.229217, "o", "\u001b[32m\u001b[0m\r\n"]
[718.231357, "o", "\u001b[32m\u001b[0m\r\n"]
[718.234401, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n"]
[718.234631, "o", "\u001b[32mrule compose_warps_native_to_unfold:\r\n    input: work/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-corobl_to-unfold_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt\r\n    output: hippunfold/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-T1w_to-unfold_mode-image_xfm.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-R_label-dentate_from-T1w_to-unfold_mode-image_composexfm.txt\r\n    jobid: 172\r\n    reason: Missing output files: hippunfold/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-T1w_to-unfold_mode-image_xfm.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-corobl_to-unfold_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz\r\n    wildcards: subject=1425, hemi=R, autotop=dentate, native_modality=T1w\r\n  "]
[718.234716, "o", "  resources: tmpdir=/tmp\u001b[0m\r\n"]
[718.234842, "o", "\u001b[32m\u001b[0m\r\n"]
[718.342776, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n"]
[718.342957, "o", "\u001b[32mFinished job 124.\u001b[0m\r\n\u001b[32m89 of 193 steps (46%) done\u001b[0m\r\n"]
[718.343887, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[718.344619, "o", "\u001b[32m\u001b[0m\r\n"]
[718.344728, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n"]
[718.344995, "o", "\u001b[32mrule correct_nan_vertices:\r\n    input: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-dentate_desc-nonancorrect_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    jobid: 123\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-dentate_midthickness.surf.gii; Input files updated by another job: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-dentate_desc-nonancorrect_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=dentate, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[718.345095, "o", "\u001b[32m\u001b[0m\r\n"]
[718.444748, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n\u001b[32mFinished job 172.\u001b[0m\r\n"]
[718.444923, "o", "\u001b[32m90 of 193 steps (47%) done\u001b[0m\r\n"]
[718.904252, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n"]
[718.904393, "o", "\u001b[32mFinished job 123.\u001b[0m\r\n\u001b[32m91 of 193 steps (47%) done\u001b[0m\r\n"]
[718.904585, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[718.905365, "o", "\u001b[32m\u001b[0m\r\n"]
[718.90546, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n"]
[718.905643, "o", "\u001b[32mrule warp_gii_to_native:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-dentate_midthickness.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    jobid: 122\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-dentate_midthickness.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt\r\n    wildcards: subject=1425, hemi=R, native_modality=T1w, density=0p5mm, autotop=dentate, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[718.905717, "o", "\u001b[32m\u001b[0m\r\n"]
[718.954822, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n\u001b[32mFinished job 122.\u001b[0m\r\n"]
[718.954988, "o", "\u001b[32m92 of 193 steps (48%) done\u001b[0m\r\n"]
[718.955732, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[718.956584, "o", "\u001b[32m\u001b[0m\r\n"]
[718.956701, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n"]
[718.956922, "o", "\u001b[32mrule smooth_surface:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_desc-smoothed_midthickness.surf.gii\r\n    jobid: 137\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_desc-smoothed_midthickness.surf.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, space=T1w, density=0p5mm, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m"]
[718.957082, "o", "\r\n\u001b[32m\u001b[0m\r\n"]
[718.960744, "o", "\u001b[32m\u001b[0m\r\n"]
[718.960876, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n"]
[718.961116, "o", "\u001b[32mrule qc_subfield_surf:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/qc/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_desc-subfields_midthickness.surf.png\r\n    jobid: 185\r\n    reason: Missing output files: hippunfold/sub-1425/qc/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_desc-subfields_midthickness.surf.png; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, ref_spaces=T1w, density=0p5mm, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m"]
[718.961223, "o", "\r\n"]
[718.961354, "o", "\u001b[32m\u001b[0m\r\n"]
[718.962364, "o", "\u001b[32m[Fri Nov 25 21:06:27 2022]\u001b[0m\r\n"]
[718.965854, "o", "\u001b[32mrule calculate_surface_area:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_surfarea.shape.gii\r\n    jobid: 121\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_surfarea.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, space=T1w, density=0p5mm, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m"]
[718.966795, "o", "\r\n"]
[718.969904, "o", "\u001b[32m\u001b[0m\r\n"]
[719.014828, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m\r\n\u001b[32mFinished job 121.\u001b[0m\r\n\u001b[32m93 of 193 steps (48%) done\u001b[0m\r\n"]
[719.015588, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[719.016439, "o", "\u001b[32m\u001b[0m\r\n"]
[719.016534, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m\r\n"]
[719.01683, "o", "\u001b[32mrule calculate_gyrification:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_surfarea.shape.gii, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_dentate/tpl-avg_space-unfold_den-0p5mm_surfarea.shape.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_gyrification.shape.gii\r\n    log: logs/sub-1425/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_calcgyrification.txt\r\n    jobid: 120\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_gyrification.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_surfarea.shape.gii\r\n    wildcards: subject=1425, hemi=R, space=T1w, density=0p5mm, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[719.016904, "o", "\u001b[32m\u001b[0m\r\n"]
[719.059449, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m"]
[719.059592, "o", "\r\n"]
[719.05984, "o", "\u001b[32mFinished job 137.\u001b[0m"]
[719.05998, "o", "\r\n"]
[719.060105, "o", "\u001b[32m94 of 193 steps (49%) done\u001b[0m"]
[719.060175, "o", "\r\n"]
[719.060629, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[719.060747, "o", "\r\n"]
[719.061484, "o", "\u001b[32m\u001b[0m"]
[719.061602, "o", "\r\n"]
[719.061714, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m"]
[719.061811, "o", "\r\n"]
[719.061902, "o", "\u001b[32mrule calculate_curvature_from_surface:"]
[719.061988, "o", "\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_desc-smoothed_midthickness.surf.gii"]
[719.062091, "o", "\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_curvature.shape.gii"]
[719.0622, "o", "\r\n    jobid: 136\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_curvature.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_desc-smoothed_midthickness.surf.gii"]
[719.062295, "o", "\r\n    wildcards: subject=1425, hemi=R, space=T1w, density=0p5mm, autotop=dentate"]
[719.062387, "o", "\r\n    resources: tmpdir=/tmp\u001b[0m"]
[719.062478, "o", "\r\n"]
[719.062568, "o", "\u001b[32m\u001b[0m\r\n"]
[719.070929, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m\r\n"]
[719.071097, "o", "\u001b[32mFinished job 120.\u001b[0m"]
[719.071706, "o", "\r\n"]
[719.071923, "o", "\u001b[32m95 of 193 steps (49%) done\u001b[0m"]
[719.072092, "o", "\r\n"]
[719.072485, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[719.072571, "o", "\r\n"]
[719.073366, "o", "\u001b[32m\u001b[0m"]
[719.073449, "o", "\r\n"]
[719.073578, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m"]
[719.073661, "o", "\r\n"]
[719.073839, "o", "\u001b[32mrule create_dscalar_metric_cifti:"]
[719.073925, "o", "\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_gyrification.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_gyrification.shape.gii"]
[719.07402, "o", "\r\n"]
[719.074122, "o", "    output: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_gyrification.dscalar.nii"]
[719.074208, "o", "\r\n"]
[719.074282, "o", "    jobid: 119\r\n"]
[719.074455, "o", "    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_gyrification.dscalar.nii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_gyrification.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_gyrification.shape.gii\r\n    wildcards: subject=1425, space=T1w, density=0p5mm, autotop=dentate, metric=gyrification\r\n    resources: tmpdir=/tmp\u001b[0m"]
[719.074529, "o", "\r\n"]
[719.074888, "o", "\u001b[32m\u001b[0m\r\n"]
[719.142884, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m\r\n\u001b[32mFinished job 136.\u001b[0m\r\n"]
[719.143714, "o", "\u001b[32m96 of 193 steps (50%) done\u001b[0m\r\n"]
[719.144033, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[719.144592, "o", "\u001b[32m\u001b[0m\r\n"]
[719.144674, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m\r\n"]
[719.144946, "o", "\u001b[32mrule create_dscalar_metric_cifti:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_curvature.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_curvature.shape.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_curvature.dscalar.nii\r\n    jobid: 135\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_curvature.dscalar.nii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_curvature.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_curvature.shape.gii\r\n    wildcards: subject=1425, space=T1w, density=0p5mm, autotop=dentate, metric=curvature\r\n    resources: tmpdir=/tmp\u001b[0m"]
[719.14504, "o", "\r\n\u001b[32m\u001b[0m\r\n"]
[719.171878, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m\r\n"]
[719.172049, "o", "\u001b[32mFinished job 119.\u001b[0m\r\n\u001b[32m97 of 193 steps (50%) done\u001b[0m\r\n"]
[719.20399, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m\r\n\u001b[32mFinished job 135.\u001b[0m\r\n"]
[719.204185, "o", "\u001b[32m98 of 193 steps (51%) done\u001b[0m\r\n"]
[719.204321, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[719.205195, "o", "\u001b[32m\u001b[0m\r\n"]
[719.205312, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m\r\n"]
[719.205542, "o", "\u001b[32mrule create_spec_file_dentate:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_gyrification.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_curvature.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-dentate_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_gyrification.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_curvature.dscalar.nii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_surfaces.spec\r\n    jobid: 138\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_surfaces.spec; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii, hippunfold/sub-1425"]
[719.205661, "o", "/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_curvature.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_gyrification.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-dentate_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_gyrification.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_curvature.shape.gii\r\n    wildcards: subject=1425, hemi=R, space=T1w, density=0p5mm, label=dentate\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[719.210453, "o", "\u001b[32m\u001b[0m\r\n"]
[719.210577, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m\r\n"]
[719.210958, "o", "\u001b[32mrule create_spec_file_dentate:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_gyrification.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_curvature.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-dentate_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_gyrification.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_curvature.dscalar.nii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_surfaces.spec\r\n    jobid: 96\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_surfaces.spec; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_curvature.dscalar.nii, hippunfold/sub-1425/surf/su"]
[719.211041, "o", "b-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_curvature.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-dentate_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_gyrification.shape.gii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_gyrification.dscalar.nii"]
[719.21148, "o", "\r\n    wildcards: subject=1425, hemi=L, space=T1w, density=0p5mm, label=dentate\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[719.211694, "o", "\u001b[32m\u001b[0m\r\n"]
[719.431359, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m\r\n"]
[719.432371, "o", "\u001b[32mFinished job 96.\u001b[0m\r\n\u001b[32m99 of 193 steps (51%) done\u001b[0m\r\n"]
[719.445806, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m\r\n\u001b[32mFinished job 138.\u001b[0m\r\n\u001b[32m100 of 193 steps (52%) done\u001b[0m\r\n"]
[719.446161, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[719.447088, "o", "\u001b[32m\u001b[0m"]
[719.44723, "o", "\r\n"]
[719.447324, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m\r\n"]
[719.44751, "o", "\u001b[32mrule merge_lr_spec_file:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_surfaces.spec, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_surfaces.spec\r\n    output: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_surfaces.spec\r\n    jobid: 95\r\n"]
[719.447585, "o", "    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_surfaces.spec; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_surfaces.spec, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_surfaces.spec\r\n    wildcards: subject=1425, space=T1w, density=0p5mm, autotop=dentate\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[719.532372, "o", "\u001b[32m[Fri Nov 25 21:06:28 2022]\u001b[0m\r\n\u001b[32mFinished job 95.\u001b[0m\r\n"]
[719.532564, "o", "\u001b[32m101 of 193 steps (52%) done\u001b[0m\r\n"]
[719.662759, "o", "/opt/conda/lib/python3.9/site-packages/nilearn/datasets/__init__.py:93: FutureWarning: Fetchers from the nilearn.datasets module will be updated in version 0.9 to return python strings instead of bytes and Pandas dataframes instead of Numpy arrays.\r\n  warn(\"Fetchers from the nilearn.datasets module will be \"\r\n"]
[720.157298, "o", "\u001b[32m[Fri Nov 25 21:06:29 2022]\u001b[0m\r\n"]
[720.157459, "o", "\u001b[32mFinished job 183.\u001b[0m\r\n\u001b[32m102 of 193 steps (53%) done\u001b[0m\r\n"]
[720.647705, "o", "/opt/conda/lib/python3.9/site-packages/nilearn/datasets/__init__.py:93: FutureWarning: Fetchers from the nilearn.datasets module will be updated in version 0.9 to return python strings instead of bytes and Pandas dataframes instead of Numpy arrays.\r\n  warn(\"Fetchers from the nilearn.datasets module will be \"\r\n"]
[721.087623, "o", "\u001b[32m[Fri Nov 25 21:06:30 2022]\u001b[0m\r\n\u001b[32mFinished job 185.\u001b[0m\r\n"]
[721.087755, "o", "\u001b[32m103 of 193 steps (53%) done\u001b[0m\r\n"]
[789.833878, "o", "\u001b[32m[Fri Nov 25 21:07:38 2022]\u001b[0m\r\n"]
[789.834063, "o", "\u001b[32mFinished job 33.\u001b[0m\r\n"]
[789.834195, "o", "\u001b[32m104 of 193 steps (54%) done\u001b[0m\r\n"]
[789.834692, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[789.836124, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:07:38 2022]\u001b[0m\r\n"]
[789.83638, "o", "\u001b[32mrule unflip_coords_equivol:"]
[789.836482, "o", "\r\n    input: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-hipp_desc-equivol_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-hipp_desc-equivol_coords.nii.gz\r\n    jobid: 32\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-hipp_desc-equivol_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-hipp_desc-equivol_coords.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=L, desc=equivol\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[790.126732, "o", "\u001b[32m[Fri Nov 25 21:07:39 2022]\u001b[0m\r\n\u001b[32mFinished job 32.\u001b[0m\r\n\u001b[32m105 of 193 steps (54%) done\u001b[0m\r\n"]
[790.148259, "o", "\u001b[32m[Fri Nov 25 21:07:39 2022]\u001b[0m\r\n\u001b[32mFinished job 71.\u001b[0m\r\n"]
[790.148406, "o", "\u001b[32m106 of 193 steps (55%) done\u001b[0m\r\n"]
[811.931153, "o", "\u001b[32m[Fri Nov 25 21:08:00 2022]\u001b[0m\r\n"]
[811.931332, "o", "\u001b[32mFinished job 163.\u001b[0m\r\n\u001b[32m107 of 193 steps (55%) done\u001b[0m\r\n"]
[818.006308, "o", "\u001b[32m[Fri Nov 25 21:08:07 2022]\u001b[0m\r\n\u001b[32mFinished job 160.\u001b[0m\r\n\u001b[32m108 of 193 steps (56%) done\u001b[0m\r\n\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[818.006631, "o", "\u001b[32m\u001b[0m\r\n"]
[818.006733, "o", "\u001b[32m[Fri Nov 25 21:08:07 2022]\u001b[0m\r\n"]
[818.007083, "o", "\u001b[32mrule unflip_coords:\r\n    input: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    jobid: 159\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-IO_hemi-Lflip_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=L, autotop=hipp, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m"]
[818.007203, "o", "\r\n\u001b[32m\u001b[0m\r\n"]
[818.293154, "o", "\u001b[32m[Fri Nov 25 21:08:07 2022]\u001b[0m\r\n\u001b[32mFinished job 159.\u001b[0m\r\n"]
[818.293291, "o", "\u001b[32m109 of 193 steps (56%) done\u001b[0m\r\n"]
[905.670903, "o", "\u001b[32m[Fri Nov 25 21:09:34 2022]\u001b[0m\r\n"]
[905.671102, "o", "\u001b[32mFinished job 13.\u001b[0m\r\n\u001b[32m110 of 193 steps (57%) done\u001b[0m\r\n\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[905.671876, "o", "\u001b[32m\u001b[0m\r\n"]
[905.672045, "o", "\u001b[32m[Fri Nov 25 21:09:34 2022]\u001b[0m\r\n"]
[905.672146, "o", "\u001b[32mrule unflip_coords:\r\n    input: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n"]
[905.672219, "o", "    output: work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    jobid: 12\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-AP_hemi-Lflip_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=AP, hemi=L, autotop=hipp, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[905.968712, "o", "\u001b[32m[Fri Nov 25 21:09:35 2022]\u001b[0m\r\n"]
[905.968777, "o", "\u001b[32mFinished job 12.\u001b[0m\r\n\u001b[32m111 of 193 steps (58%) done\u001b[0m\r\n"]
[905.969107, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[905.96996, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:09:35 2022]\u001b[0m\r\n"]
[905.970235, "o", "\u001b[32mrule create_native_coord_ref:\r\n    input: work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_hemi-L_space-corobl_label-hipp_refcoords.nii.gz\r\n    jobid: 35\r\n"]
[905.970359, "o", "    reason: Missing output files: work/sub-1425/coords/sub-1425_hemi-L_space-corobl_label-hipp_refcoords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, hemi=L, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[906.652689, "o", "\u001b[32m[Fri Nov 25 21:09:35 2022]\u001b[0m\r\n"]
[906.652861, "o", "\u001b[32mFinished job 35.\u001b[0m\r\n\u001b[32m112 of 193 steps (58%) done\u001b[0m\r\n"]
[948.346967, "o", "\u001b[32m[Fri Nov 25 21:10:17 2022]\u001b[0m\r\n\u001b[32mFinished job 61.\u001b[0m\r\n\u001b[32m113 of 193 steps (59%) done\u001b[0m\r\n"]
[948.347147, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[948.348059, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:10:17 2022]\u001b[0m\r\n"]
[948.348209, "o", "\u001b[32mrule create_native_coord_ref:\r\n    input: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_hemi-R_space-corobl_label-hipp_refcoords.nii.gz\r\n    jobid: 73\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_hemi-R_space-corobl_label-hipp_refcoords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, hemi=R, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[948.348416, "o", "\u001b[32m\u001b[0m\r\n"]
[949.009702, "o", "\u001b[32m[Fri Nov 25 21:10:18 2022]\u001b[0m\r\n\u001b[32mFinished job 73.\u001b[0m\r\n\u001b[32m114 of 193 steps (59%) done\u001b[0m\r\n"]
[1322.074879, "o", "\u001b[32m[Fri Nov 25 21:16:31 2022]\u001b[0m\r\n\u001b[32mFinished job 69.\u001b[0m\r\n\u001b[32m115 of 193 steps (60%) done\u001b[0m\r\n\u001b[33mSelect jobs to execute...\u001b[0m\r\n\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:16:31 2022]\u001b[0m\r\n\u001b[32mrule create_warps_hipp:\r\n    input: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, work/sub-1425/coords/sub-1425_space-unfold_label-hipp_refcoords.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-equivol_coords.nii.gz, work/sub-1425/coords/sub-1425_hemi-R_space-corobl_label-hipp_refcoords.nii.gz\r\n    output: work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-corobl_to-unfold_mode-surface_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-corobl_mode-image_xfm."]
[1322.075055, "o", "nii.gz, work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-corobl_to-unfold_mode-image_xfm.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-R_create_warps-hipp.txt\r\n    jobid: 60\r\n    reason: Missing output files: work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-corobl_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-corobl_to-unfold_mode-image_xfm.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-equivol_coords.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, work/sub-1425/coords/sub-1425_space-unfold_label-hipp_refcoords.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_hemi-R_space-corobl_label-hipp_refcoords.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-laplace_c"]
[1322.075132, "o", "oords.nii.gz\r\n    wildcards: subject=1425, hemi=R\r\n    resources: tmpdir=/tmp, mem_mb=16000\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1322.075258, "o", "\u001b[32m[Fri Nov 25 21:16:31 2022]\u001b[0m\r\n"]
[1322.075638, "o", "\u001b[32mrule label_subfields_from_vol_coords_corobl:\r\n    input: work/sub-1425/anat/sub-1425_hemi-R_space-unfold_label-hipp_atlas-bigbrain_subfields.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-equivol_coords.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-subfieldsnotissue_atlas-bigbrain_dseg.nii.gz\r\n    jobid: 147\r\n"]
[1322.075801, "o", "    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-subfieldsnotissue_atlas-bigbrain_dseg.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-equivol_coords.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-unfold_label-hipp_atlas-bigbrain_subfields.nii.gz\r\n    wildcards: subject=1425, hemi=R, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m"]
[1322.076463, "o", "\r\n"]
[1322.078706, "o", "\u001b[32m\u001b[0m\r\n"]
[1322.913357, "o", "\u001b[32m[Fri Nov 25 21:16:32 2022]\u001b[0m\r\n"]
[1322.913427, "o", "\u001b[32mFinished job 147.\u001b[0m\r\n\u001b[32m116 of 193 steps (60%) done\u001b[0m\r\n"]
[1322.914256, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1322.915388, "o", "\u001b[32m\u001b[0m\r\n"]
[1322.915525, "o", "\u001b[32m[Fri Nov 25 21:16:32 2022]\u001b[0m\r\n"]
[1322.915625, "o", "\u001b[32mrule combine_tissue_subfield_labels_corobl:\r\n    input: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-postproc_dseg.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-subfieldsnotissue_atlas-bigbrain_dseg.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    jobid: 146\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-subfields_atlas-bigbrain_dseg.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-subfieldsnotissue_atlas-bigbrain_dseg.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-postproc_dseg.nii.gz\r\n    wildcards: subject=1425, hemi=R, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1322.915695, "o", "\u001b[32m\u001b[0m\r\n"]
[1323.342691, "o", "\u001b[32m[Fri Nov 25 21:16:32 2022]\u001b[0m\r\n"]
[1323.342753, "o", "\u001b[32mFinished job 146.\u001b[0m\r\n\u001b[32m117 of 193 steps (61%) done\u001b[0m\r\n"]
[1323.343668, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1323.344895, "o", "\u001b[32m\u001b[0m\r\n"]
[1323.345059, "o", "\u001b[32m[Fri Nov 25 21:16:32 2022]\u001b[0m\r\n"]
[1323.345268, "o", "\u001b[32mrule resample_subfields_to_native:\r\n    input: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-subfields_atlas-bigbrain_dseg.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz\r\n    output: hippunfold/sub-1425/anat/sub-1425_hemi-R_space-T1w_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    jobid: 149\r\n    reason: Missing output files: hippunfold/sub-1425/anat/sub-1425_hemi-R_space-T1w_desc-subfields_atlas-bigbrain_dseg.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    wildcards: subject=1425, hemi=R, native_modality=T1w, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1323.345346, "o", "\u001b[32m\u001b[0m\r\n"]
[1325.754868, "o", "\u001b[32m[Fri Nov 25 21:16:35 2022]\u001b[0m\r\n\u001b[32mFinished job 149.\u001b[0m\r\n"]
[1325.755032, "o", "\u001b[32m118 of 193 steps (61%) done\u001b[0m\r\n"]
[1325.75577, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1325.757117, "o", "\u001b[32m\u001b[0m\r\n"]
[1325.757211, "o", "\u001b[32m[Fri Nov 25 21:16:35 2022]\u001b[0m\r\n"]
[1325.757343, "o", "\u001b[32mrule create_native_crop_ref:\r\n    input: hippunfold/sub-1425/anat/sub-1425_hemi-R_space-T1w_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    output: work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    jobid: 148\r\n    reason: Missing output files: work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz; Input files updated by another job: hippunfold/sub-1425/anat/sub-1425_hemi-R_space-T1w_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    wildcards: subject=1425, hemi=R, native_modality=T1w\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1325.757417, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.88203, "o", "\u001b[32m[Fri Nov 25 21:16:36 2022]\u001b[0m\r\n"]
[1326.882097, "o", "\u001b[32mFinished job 148.\u001b[0m\r\n\u001b[32m119 of 193 steps (62%) done\u001b[0m\r\n"]
[1326.883111, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1326.887883, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.888029, "o", "\u001b[32m[Fri Nov 25 21:16:36 2022]\u001b[0m\r\n"]
[1326.888243, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz\r\n    jobid: 157\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    wildcards: subject=1425, dir=PD, hemi=R, native_modality=T1w, autotop=dentate, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1326.888341, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.890279, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.890419, "o", "\u001b[32m[Fri Nov 25 21:16:36 2022]\u001b[0m\r\n"]
[1326.890729, "o", "\u001b[32mrule resample_subfields_native_crop:\r\n    input: work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-subfields_atlas-bigbrain_dseg.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    jobid: 145\r\n    reason: Missing output files: hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz, work/sub-1425/anat/sub-1425_hemi-R_space-corobl_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    wildcards: subject=1425, hemi=R, native_modality=T1w, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1326.890861, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.899929, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:16:36 2022]\u001b[0m\r\n"]
[1326.900044, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz\r\n    jobid: 162\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=R, native_modality=T1w, autotop=hipp, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1326.904055, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.905929, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.906049, "o", "\u001b[32m[Fri Nov 25 21:16:36 2022]\u001b[0m\r\n"]
[1326.906227, "o", "\u001b[32mrule compose_warps_unfold_to_crop_native:\r\n    input: work/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-unfold_to-corobl_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz\r\n    output: hippunfold/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-unfold_to-T1w_mode-image_xfm.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-R_label-dentate_from-unfold_to-T1w_mode-image_composexfm.txt\r\n    jobid: 176\r\n    reason: Missing output files: hippunfold/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-unfold_to-T1w_mode-image_xfm.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-unfold_to-corobl_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps"]
[1326.906321, "o", "/sub-1425_space-unfold_label-dentate_refvol.nii.gz\r\n    wildcards: subject=1425, hemi=R, autotop=dentate, native_modality=T1w\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1326.912141, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.917239, "o", "\u001b[32m[Fri Nov 25 21:16:36 2022]\u001b[0m\r\n"]
[1326.91755, "o", "\u001b[32mrule resample_native_to_crop:\r\n    input: hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-preproc_T1w.nii.gz\r\n    jobid: 178\r\n    reason: Missing output files: hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-preproc_T1w.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz, hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz\r\n    wildcards: subject=1425, hemi=R, native_modality=T1w\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1326.917655, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.924297, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.9244, "o", "\u001b[32m[Fri Nov 25 21:16:36 2022]\u001b[0m\r\n"]
[1326.924581, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz\r\n    jobid: 151\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    wildcards: subject=1425, dir=AP, hemi=R, native_modality=T1w, autotop=hipp, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1326.924674, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.926844, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.931011, "o", "\u001b[32m[Fri Nov 25 21:16:36 2022]\u001b[0m\r\n"]
[1326.931267, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz\r\n    jobid: 166\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=R, native_modality=T1w, autotop=dentate, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1326.931378, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.934586, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.934768, "o", "\u001b[32m[Fri Nov 25 21:16:36 2022]\u001b[0m\r\n"]
[1326.934871, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-equivol_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-cropT1w_label-hipp_desc-equivol_coords.nii.gz\r\n    jobid: 168\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-cropT1w_label-hipp_desc-equivol_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-corobl_label-hipp_desc-equivol_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=R, native_modality=T1w, autotop=hipp, desc=equivol\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1326.940668, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.947667, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.948229, "o", "\u001b[32m[Fri Nov 25 21:16:36 2022]\u001b[0m\r\n"]
[1326.948385, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz\r\n    jobid: 153\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=AP, hemi=R, native_modality=T1w, autotop=dentate, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1326.948501, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.950042, "o", "\u001b[32m\u001b[0m\r\n"]
[1326.953565, "o", "\u001b[32m[Fri Nov 25 21:16:36 2022]\u001b[0m\r\n"]
[1326.95371, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz\r\n    jobid: 155\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=PD, hemi=R, native_modality=T1w, autotop=hipp, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1326.953784, "o", "\u001b[32m\u001b[0m\r\n"]
[1328.641947, "o", "\u001b[32m[Fri Nov 25 21:16:37 2022]\u001b[0m\r\n\u001b[32mFinished job 166.\u001b[0m\r\n"]
[1328.642108, "o", "\u001b[32m120 of 193 steps (62%) done\u001b[0m\r\n"]
[1328.646195, "o", "\u001b[32m[Fri Nov 25 21:16:37 2022]\u001b[0m\r\n"]
[1328.64629, "o", "\u001b[32mFinished job 162.\u001b[0m\r\n"]
[1328.646371, "o", "\u001b[32m121 of 193 steps (63%) done\u001b[0m\r\n"]
[1328.776086, "o", "\u001b[32m[Fri Nov 25 21:16:38 2022]\u001b[0m\r\n\u001b[32mFinished job 153.\u001b[0m\r\n\u001b[32m122 of 193 steps (63%) done\u001b[0m\r\n"]
[1328.821858, "o", "\u001b[32m[Fri Nov 25 21:16:38 2022]\u001b[0m\r\n"]
[1328.821996, "o", "\u001b[32mFinished job 151.\u001b[0m\r\n\u001b[32m123 of 193 steps (64%) done\u001b[0m\r\n"]
[1328.912526, "o", "\u001b[32m[Fri Nov 25 21:16:38 2022]\u001b[0m\r\n"]
[1328.912678, "o", "\u001b[32mFinished job 155.\u001b[0m\r\n"]
[1328.912769, "o", "\u001b[32m124 of 193 steps (64%) done\u001b[0m\r\n"]
[1328.938239, "o", "\u001b[32m[Fri Nov 25 21:16:38 2022]\u001b[0m\r\n"]
[1328.938393, "o", "\u001b[32mFinished job 157.\u001b[0m\r\n"]
[1328.938461, "o", "\u001b[32m125 of 193 steps (65%) done\u001b[0m\r\n"]
[1328.945582, "o", "\u001b[32m[Fri Nov 25 21:16:38 2022]\u001b[0m\r\n"]
[1328.945626, "o", "\u001b[32mFinished job 168.\u001b[0m\r\n"]
[1328.945746, "o", "\u001b[32m126 of 193 steps (65%) done\u001b[0m\r\n"]
[1334.170405, "o", "\u001b[32m[Fri Nov 25 21:16:43 2022]\u001b[0m\r\n"]
[1334.170563, "o", "\u001b[32mFinished job 178.\u001b[0m\r\n\u001b[32m127 of 193 steps (66%) done\u001b[0m\r\n"]
[1339.887147, "o", "\u001b[32m[Fri Nov 25 21:16:49 2022]\u001b[0m\r\n"]
[1339.887359, "o", "\u001b[32mFinished job 60.\u001b[0m\r\n\u001b[32m128 of 193 steps (66%) done\u001b[0m\r\n"]
[1339.888112, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1339.891025, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:16:49 2022]\u001b[0m\r\n"]
[1339.891448, "o", "\u001b[32mrule compose_warps_unfold_to_crop_native:\r\n    input: work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-corobl_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz\r\n    output: hippunfold/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-T1w_mode-image_xfm.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-R_label-hipp_from-unfold_to-T1w_mode-image_composexfm.txt\r\n    jobid: 174\r\n    reason: Missing output files: hippunfold/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-T1w_mode-image_xfm.nii.gz; Input files updated by another job: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-corobl_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T"]
[1339.891605, "o", "1w_to-corobl_type-itk_xfm.txt\r\n    wildcards: subject=1425, hemi=R, autotop=hipp, native_modality=T1w\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1339.893705, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:16:49 2022]\u001b[0m\r\n\u001b[32mrule warp_gii_unfold2native:\r\n    input: work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_outer.surf.gii\r\n    output: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_outer.surf.gii\r\n    jobid: 88\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_outer.surf.gii; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_outer.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=hipp, surfname=outer\r\n    resources: tmpdir=/tmp\u001b[0m"]
[1339.895586, "o", "\r\n"]
[1339.896226, "o", "\u001b[32m\u001b[0m\r\n"]
[1339.898841, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:16:49 2022]\u001b[0m\r\n\u001b[32mrule compose_warps_native_to_unfold:\r\n    input: work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-corobl_to-unfold_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt\r\n    output: hippunfold/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-T1w_to-unfold_mode-image_xfm.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-R_label-hipp_from-T1w_to-unfold_mode-image_composexfm.txt\r\n    jobid: 170\r\n    reason: Missing output files: hippunfold/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-T1w_to-unfold_mode-image_xfm.nii.gz; Input files updated by another job: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-corobl_to-unfold_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt\r\n    wildcards: subject=1425, hemi=R, autotop=hipp,"]
[1339.899008, "o", " native_modality=T1w\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1339.902979, "o", "\u001b[32m\u001b[0m\r\n"]
[1339.904968, "o", "\u001b[32m\u001b[0m\r\n"]
[1339.905136, "o", "\u001b[32m[Fri Nov 25 21:16:49 2022]\u001b[0m\r\n"]
[1339.9057, "o", "\u001b[32mrule warp_gii_unfold2native:\r\n    input: work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_inner.surf.gii\r\n    output: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_inner.surf.gii\r\n    jobid: 83\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_inner.surf.gii; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_inner.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=hipp, surfname=inner\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1339.905793, "o", "\u001b[32m\u001b[0m\r\n"]
[1339.91051, "o", "\u001b[32m\u001b[0m\r\n"]
[1339.910619, "o", "\u001b[32m[Fri Nov 25 21:16:49 2022]\u001b[0m\r\n"]
[1339.915246, "o", "\u001b[32mrule warp_gii_unfold2native:\r\n    input: work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_midthickness.surf.gii\r\n    output: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_midthickness.surf.gii\r\n    jobid: 59\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_midthickness.surf.gii; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=hipp, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1340.106637, "o", "\u001b[32m[Fri Nov 25 21:16:49 2022]\u001b[0m\r\n"]
[1340.10678, "o", "\u001b[32mFinished job 88.\u001b[0m\r\n\u001b[32m129 of 193 steps (67%) done\u001b[0m\r\n"]
[1340.107164, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1340.108006, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.108092, "o", "\u001b[32m[Fri Nov 25 21:16:49 2022]\u001b[0m\r\n"]
[1340.108287, "o", "\u001b[32mrule correct_nan_vertices:\r\n    input: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_outer.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_outer.surf.gii\r\n    jobid: 87\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_outer.surf.gii; Input files updated by another job: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_outer.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=hipp, surfname=outer\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1340.108359, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.12479, "o", "\u001b[32m[Fri Nov 25 21:16:49 2022]\u001b[0m\r\n\u001b[32mFinished job 59.\u001b[0m\r\n"]
[1340.124973, "o", "\u001b[32m130 of 193 steps (67%) done\u001b[0m\r\n"]
[1340.125714, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1340.126461, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.126569, "o", "\u001b[32m[Fri Nov 25 21:16:49 2022]\u001b[0m\r\n"]
[1340.12677, "o", "\u001b[32mrule correct_nan_vertices:\r\n    input: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    jobid: 58\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_midthickness.surf.gii; Input files updated by another job: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=hipp, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1340.126842, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.137543, "o", "\u001b[32m[Fri Nov 25 21:16:49 2022]\u001b[0m\r\n\u001b[32mFinished job 83.\u001b[0m\r\n"]
[1340.137695, "o", "\u001b[32m131 of 193 steps (68%) done\u001b[0m\r\n"]
[1340.138134, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1340.138927, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.139028, "o", "\u001b[32m[Fri Nov 25 21:16:49 2022]\u001b[0m\r\n"]
[1340.139114, "o", "\u001b[32mrule correct_nan_vertices:\r\n    input: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_inner.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_inner.surf.gii\r\n    jobid: 82\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_inner.surf.gii; Input files updated by another job: work/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_inner.surf.gii\r\n    wildcards: subject=1425, hemi=R, density=0p5mm, autotop=hipp, surfname=inner\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1340.139187, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.506649, "o", "\u001b[32m[Fri Nov 25 21:16:49 2022]\u001b[0m\r\n\u001b[32mFinished job 170.\u001b[0m\r\n"]
[1340.5068, "o", "\u001b[32m132 of 193 steps (68%) done\u001b[0m\r\n"]
[1340.766017, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n\u001b[32mFinished job 82.\u001b[0m\r\n\u001b[32m133 of 193 steps (69%) done\u001b[0m\r\n"]
[1340.766331, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1340.767134, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.767225, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n"]
[1340.767464, "o", "\u001b[32mrule warp_gii_to_native:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_inner.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_inner.surf.gii\r\n    jobid: 81\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_inner.surf.gii; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_inner.surf.gii\r\n    wildcards: subject=1425, hemi=R, native_modality=T1w, density=0p5mm, autotop=hipp, surfname=inner\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1340.767551, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.787212, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n\u001b[32mFinished job 58.\u001b[0m\r\n"]
[1340.787348, "o", "\u001b[32m134 of 193 steps (69%) done\u001b[0m\r\n"]
[1340.787711, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1340.788527, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.7886, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n"]
[1340.789167, "o", "\u001b[32mrule warp_gii_to_native:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_midthickness.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    jobid: 57\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_midthickness.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt\r\n    wildcards: subject=1425, hemi=R, native_modality=T1w, density=0p5mm, autotop=hipp, surfname=midthickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1340.789241, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.825599, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n\u001b[32mFinished job 87.\u001b[0m\r\n\u001b[32m135 of 193 steps (70%) done\u001b[0m\r\n"]
[1340.826129, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1340.827123, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.82724, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n"]
[1340.827481, "o", "\u001b[32mrule warp_gii_to_native:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_outer.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_outer.surf.gii\r\n    jobid: 86\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_outer.surf.gii; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-corobl_den-0p5mm_label-hipp_outer.surf.gii\r\n    wildcards: subject=1425, hemi=R, native_modality=T1w, density=0p5mm, autotop=hipp, surfname=outer\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1340.82758, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.855705, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n\u001b[32mFinished job 81.\u001b[0m\r\n"]
[1340.855883, "o", "\u001b[32m136 of 193 steps (70%) done\u001b[0m\r\n"]
[1340.870907, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n\u001b[32mFinished job 57.\u001b[0m\r\n"]
[1340.871071, "o", "\u001b[32m137 of 193 steps (71%) done\u001b[0m\r\n"]
[1340.871353, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1340.872955, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.873108, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n"]
[1340.873333, "o", "\u001b[32mrule calculate_surface_area:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_surfarea.shape.gii\r\n    jobid: 56\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_surfarea.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, space=T1w, density=0p5mm, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1340.873411, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.874918, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.875066, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n"]
[1340.879107, "o", "\u001b[32mrule smooth_surface:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_desc-smoothed_midthickness.surf.gii\r\n    jobid: 78\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_desc-smoothed_midthickness.surf.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, space=T1w, density=0p5mm, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1340.879264, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.882786, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.88668, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n"]
[1340.886884, "o", "\u001b[32mrule qc_subfield_surf:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/qc/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_desc-subfields_midthickness.surf.png\r\n    jobid: 184\r\n    reason: Missing output files: hippunfold/sub-1425/qc/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_desc-subfields_midthickness.surf.png; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, ref_spaces=T1w, density=0p5mm, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1340.887032, "o", "\u001b[32m\u001b[0m\r\n"]
[1340.911744, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n\u001b[32mFinished job 86.\u001b[0m\r\n"]
[1340.91193, "o", "\u001b[32m138 of 193 steps (72%) done\u001b[0m\r\n"]
[1340.912456, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[1340.912576, "o", "\r\n"]
[1340.914208, "o", "\u001b[32m\u001b[0m"]
[1340.914303, "o", "\r\n"]
[1340.914543, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m"]
[1340.914636, "o", "\r\n"]
[1340.914999, "o", "\u001b[32mrule calculate_thickness_from_surface:"]
[1340.915078, "o", "\r\n"]
[1340.915184, "o", "    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_inner.surf.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_outer.surf.gii"]
[1340.91528, "o", "\r\n"]
[1340.915391, "o", "    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_thickness.shape.gii"]
[1340.915483, "o", "\r\n"]
[1340.915584, "o", "    jobid: 80"]
[1340.915678, "o", "\r\n"]
[1340.915801, "o", "    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_thickness.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_inner.surf.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_outer.surf.gii"]
[1340.915886, "o", "\r\n"]
[1340.915988, "o", "    wildcards: subject=1425, hemi=R, space=T1w, density=0p5mm, autotop=hipp"]
[1340.916078, "o", "\r\n"]
[1340.916178, "o", "    resources: tmpdir=/tmp\u001b[0m"]
[1340.91629, "o", "\r\n"]
[1340.916546, "o", "\u001b[32m\u001b[0m"]
[1340.916635, "o", "\r\n"]
[1340.933662, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n"]
[1340.933862, "o", "\u001b[32mFinished job 56.\u001b[0m\r\n"]
[1340.934071, "o", "\u001b[32m139 of 193 steps (72%) done\u001b[0m"]
[1340.934183, "o", "\r\n"]
[1340.934708, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[1340.93484, "o", "\r\n"]
[1340.93567, "o", "\u001b[32m\u001b[0m"]
[1340.935803, "o", "\r\n"]
[1340.935915, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m"]
[1340.936092, "o", "\r\n"]
[1340.936254, "o", "\u001b[32mrule calculate_gyrification:"]
[1340.936352, "o", "\r\n"]
[1340.936451, "o", "    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_surfarea.shape.gii, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_hipp/tpl-avg_space-unfold_den-0p5mm_surfarea.shape.gii"]
[1340.936584, "o", "\r\n"]
[1340.936725, "o", "    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_gyrification.shape.gii"]
[1340.937097, "o", "\r\n    log: logs/sub-1425/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_calcgyrification.txt"]
[1340.937211, "o", "\r\n"]
[1340.937322, "o", "    jobid: 55"]
[1340.937422, "o", "\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_gyrification.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_surfarea.shape.gii"]
[1340.937517, "o", "\r\n"]
[1340.937621, "o", "    wildcards: subject=1425, hemi=R, space=T1w, density=0p5mm, autotop=hipp"]
[1340.937723, "o", "\r\n    resources: tmpdir=/tmp\u001b[0m"]
[1340.937815, "o", "\r\n"]
[1340.938025, "o", "\u001b[32m\u001b[0m"]
[1340.938119, "o", "\r\n"]
[1340.977351, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n"]
[1340.977497, "o", "\u001b[32mFinished job 80.\u001b[0m"]
[1340.97761, "o", "\r\n"]
[1340.977685, "o", "\u001b[32m140 of 193 steps (73%) done\u001b[0m"]
[1340.977777, "o", "\r\n"]
[1340.98708, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n"]
[1340.987203, "o", "\u001b[32mFinished job 55.\u001b[0m\r\n"]
[1340.987351, "o", "\u001b[32m141 of 193 steps (73%) done\u001b[0m\r\n"]
[1341.096045, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n\u001b[32mFinished job 78.\u001b[0m\r\n"]
[1341.096104, "o", "\u001b[32m142 of 193 steps (74%) done\u001b[0m\r\n"]
[1341.096816, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1341.097498, "o", "\u001b[32m\u001b[0m\r\n"]
[1341.097632, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n"]
[1341.097718, "o", "\u001b[32mrule calculate_curvature_from_surface:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_desc-smoothed_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_curvature.shape.gii\r\n    jobid: 77\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_curvature.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_desc-smoothed_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, space=T1w, density=0p5mm, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1341.097784, "o", "\u001b[32m\u001b[0m\r\n"]
[1341.155135, "o", "\u001b[32m[Fri Nov 25 21:16:50 2022]\u001b[0m\r\n\u001b[32mFinished job 77.\u001b[0m\r\n\u001b[32m143 of 193 steps (74%) done\u001b[0m\r\n"]
[1342.256025, "o", "/opt/conda/lib/python3.9/site-packages/nilearn/datasets/__init__.py:93: FutureWarning: Fetchers from the nilearn.datasets module will be updated in version 0.9 to return python strings instead of bytes and Pandas dataframes instead of Numpy arrays.\r\n  warn(\"Fetchers from the nilearn.datasets module will be \"\r\n"]
[1343.014746, "o", "\u001b[32m[Fri Nov 25 21:16:52 2022]\u001b[0m\r\n\u001b[32mFinished job 184.\u001b[0m\r\n\u001b[32m144 of 193 steps (75%) done\u001b[0m\r\n"]
[1352.031695, "o", "\u001b[32m[Fri Nov 25 21:17:01 2022]\u001b[0m\r\n\u001b[32mFinished job 176.\u001b[0m\r\n\u001b[32m145 of 193 steps (75%) done\u001b[0m\r\n"]
[1353.012374, "o", "\u001b[32m[Fri Nov 25 21:17:02 2022]\u001b[0m\r\n\u001b[32mFinished job 30.\u001b[0m\r\n\u001b[32m146 of 193 steps (76%) done\u001b[0m\r\n"]
[1353.012568, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1353.013053, "o", "\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:17:02 2022]\u001b[0m\r\n"]
[1353.01325, "o", "\u001b[32mrule unflip_coords:\r\n    input: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    output: work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    jobid: 29\r\n    reason: Missing output files: work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/coords/sub-1425_dir-PD_hemi-Lflip_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=PD, hemi=L, autotop=hipp, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1353.013368, "o", "\u001b[32m\u001b[0m\r\n"]
[1353.296728, "o", "\u001b[32m[Fri Nov 25 21:17:02 2022]\u001b[0m\r\n"]
[1353.296793, "o", "\u001b[32mFinished job 29.\u001b[0m\r\n\u001b[32m147 of 193 steps (76%) done\u001b[0m\r\n"]
[1353.297434, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1353.298934, "o", "\u001b[32m\u001b[0m\r\n"]
[1353.298962, "o", "\u001b[32m[Fri Nov 25 21:17:02 2022]\u001b[0m\r\n"]
[1353.299137, "o", "\u001b[32mrule create_warps_hipp:\r\n"]
[1353.299346, "o", "    input: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, work/sub-1425/coords/sub-1425_space-unfold_label-hipp_refcoords.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-hipp_desc-equivol_coords.nii.gz, work/sub-1425/coords/sub-1425_hemi-L_space-corobl_label-hipp_refcoords.nii.gz\r\n    output: work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-corobl_to-unfold_mode-surface_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-corobl_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-corobl_to-unfold_mode-image_xfm.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-L_create_warps-hipp.txt\r\n    jobid: 9\r\n    reason: Missing output files: work/s"]
[1353.299403, "o", "ub-1425/warps/sub-1425_hemi-L_label-hipp_from-corobl_to-unfold_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-corobl_mode-image_xfm.nii.gz; Input files updated by another job: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, work/sub-1425/coords/sub-1425_space-unfold_label-hipp_refcoords.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_hemi-L_space-corobl_label-hipp_refcoords.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-hipp_desc-equivol_coords.nii.gz\r\n    wildcards: subject=1425, hemi=L\r\n    resources: tmpdir=/tmp, mem_mb=16000\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1353.301708, "o", "\u001b[32m[Fri Nov 25 21:17:02 2022]\u001b[0m\r\n"]
[1353.301871, "o", "\u001b[32mrule label_subfields_from_vol_coords_corobl:\r\n    input: work/sub-1425/anat/sub-1425_hemi-L_space-unfold_label-hipp_atlas-bigbrain_subfields.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-hipp_desc-equivol_coords.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-subfieldsnotissue_atlas-bigbrain_dseg.nii.gz\r\n    jobid: 142\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-subfieldsnotissue_atlas-bigbrain_dseg.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-L_space-unfold_label-hipp_atlas-bigbrain_subfields.nii.gz, work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz, wo"]
[1353.301935, "o", "rk/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-hipp_desc-equivol_coords.nii.gz\r\n    wildcards: subject=1425, hemi=L, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1353.301994, "o", "\u001b[32m\u001b[0m\r\n"]
[1354.176715, "o", "\u001b[32m[Fri Nov 25 21:17:03 2022]\u001b[0m\r\n"]
[1354.176878, "o", "\u001b[32mFinished job 142.\u001b[0m\r\n\u001b[32m148 of 193 steps (77%) done\u001b[0m\r\n"]
[1354.177695, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1354.179184, "o", "\u001b[32m\u001b[0m\r\n"]
[1354.179328, "o", "\u001b[32m[Fri Nov 25 21:17:03 2022]\u001b[0m\r\n"]
[1354.179545, "o", "\u001b[32mrule combine_tissue_subfield_labels_corobl:\r\n    input: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-postproc_dseg.nii.gz, work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-subfieldsnotissue_atlas-bigbrain_dseg.nii.gz\r\n    output: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    jobid: 140\r\n    reason: Missing output files: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-subfields_atlas-bigbrain_dseg.nii.gz; Input files updated by another job: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-subfieldsnotissue_atlas-bigbrain_dseg.nii.gz, work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-postproc_dseg.nii.gz\r\n"]
[1354.179617, "o", "    wildcards: subject=1425, hemi=L, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1354.606554, "o", "\u001b[32m[Fri Nov 25 21:17:03 2022]\u001b[0m\r\n\u001b[32mFinished job 140.\u001b[0m\r\n"]
[1354.606933, "o", "\u001b[32m149 of 193 steps (77%) done\u001b[0m\r\n"]
[1354.607782, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1354.609121, "o", "\u001b[32m\u001b[0m\r\n"]
[1354.609342, "o", "\u001b[32m[Fri Nov 25 21:17:03 2022]\u001b[0m\r\n"]
[1354.609884, "o", "\u001b[32mrule resample_subfields_to_native:\r\n"]
[1354.610065, "o", "    input: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-subfields_atlas-bigbrain_dseg.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz\r\n    output: hippunfold/sub-1425/anat/sub-1425_hemi-L_space-T1w_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    jobid: 144\r\n    reason: Missing output files: hippunfold/sub-1425/anat/sub-1425_hemi-L_space-T1w_desc-subfields_atlas-bigbrain_dseg.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-subfields_atlas-bigbrain_dseg.nii.gz, hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz\r\n    wildcards: subject=1425, hemi=L, native_modality=T1w, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1354.610149, "o", "\u001b[32m\u001b[0m\r\n"]
[1356.952638, "o", "\u001b[32m[Fri Nov 25 21:17:06 2022]\u001b[0m\r\n"]
[1356.952859, "o", "\u001b[32mFinished job 144.\u001b[0m\r\n"]
[1356.953243, "o", "\u001b[32m150 of 193 steps (78%) done\u001b[0m\r\n"]
[1356.954129, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1356.955408, "o", "\u001b[32m\u001b[0m\r\n"]
[1356.955537, "o", "\u001b[32m[Fri Nov 25 21:17:06 2022]\u001b[0m\r\n"]
[1356.95601, "o", "\u001b[32mrule create_native_crop_ref:\r\n    input: hippunfold/sub-1425/anat/sub-1425_hemi-L_space-T1w_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    output: work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz\r\n    jobid: 143\r\n"]
[1356.956112, "o", "    reason: Missing output files: work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz; Input files updated by another job: hippunfold/sub-1425/anat/sub-1425_hemi-L_space-T1w_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    wildcards: subject=1425, hemi=L, native_modality=T1w\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1358.066402, "o", "\u001b[32m[Fri Nov 25 21:17:07 2022]\u001b[0m\r\n"]
[1358.066459, "o", "\u001b[32mFinished job 143.\u001b[0m\r\n"]
[1358.066648, "o", "\u001b[32m151 of 193 steps (78%) done\u001b[0m\r\n"]
[1358.067791, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1358.07246, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.072608, "o", "\u001b[32m[Fri Nov 25 21:17:07 2022]\u001b[0m\r\n"]
[1358.073146, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz\r\n    jobid: 158\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=L, native_modality=T1w, autotop=hipp, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1358.073282, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.07419, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.074309, "o", "\u001b[32m[Fri Nov 25 21:17:07 2022]\u001b[0m\r\n"]
[1358.074424, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz\r\n    jobid: 150\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=AP, hemi=L, native_modality=T1w, autotop=hipp, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1358.074514, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.080742, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.084976, "o", "\u001b[32m[Fri Nov 25 21:17:07 2022]\u001b[0m\r\n"]
[1358.085169, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz\r\n    jobid: 165\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=L, native_modality=T1w, autotop=dentate, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1358.085349, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.087738, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.087855, "o", "\u001b[32m[Fri Nov 25 21:17:07 2022]\u001b[0m\r\n"]
[1358.088182, "o", "\u001b[32mrule resample_subfields_native_crop:\r\n    input: work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-subfields_atlas-bigbrain_dseg.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/anat/sub-1425_hemi-L_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    jobid: 139\r\n    reason: Missing output files: hippunfold/sub-1425/anat/sub-1425_hemi-L_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/anat/sub-1425_hemi-L_space-corobl_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    wildcards: subject=1425, hemi=L, native_modality=T1w, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1358.091339, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.09397, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.094166, "o", "\u001b[32m[Fri Nov 25 21:17:07 2022]\u001b[0m\r\n"]
[1358.094281, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz\r\n    jobid: 154\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-hipp_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=PD, hemi=L, native_modality=T1w, autotop=hipp, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m"]
[1358.096617, "o", "\r\n"]
[1358.0973, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.099785, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.10236, "o", "\u001b[32m[Fri Nov 25 21:17:07 2022]\u001b[0m\r\n"]
[1358.102668, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz\r\n    jobid: 156\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=PD, hemi=L, native_modality=T1w, autotop=dentate, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1358.10278, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.105297, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.10541, "o", "\u001b[32m[Fri Nov 25 21:17:07 2022]\u001b[0m\r\n"]
[1358.105608, "o", "\u001b[32mrule compose_warps_unfold_to_crop_native:\r\n    input: work/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-unfold_to-corobl_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz\r\n    output: hippunfold/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-unfold_to-T1w_mode-image_xfm.nii.gz\r\n    log: logs/sub-1425/sub-1425_hemi-L_label-dentate_from-unfold_to-T1w_mode-image_composexfm.txt\r\n    jobid: 175\r\n    reason: Missing output files: hippunfold/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-unfold_to-T1w_mode-image_xfm.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-unfold_to-corobl_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps"]
[1358.105707, "o", "/sub-1425_space-unfold_label-dentate_refvol.nii.gz\r\n    wildcards: subject=1425, hemi=L, autotop=dentate, native_modality=T1w\r\n    resources: tmpdir=/tmp\u001b[0m"]
[1358.108967, "o", "\r\n"]
[1358.10949, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.117628, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.117775, "o", "\u001b[32m[Fri Nov 25 21:17:07 2022]\u001b[0m\r\n"]
[1358.118078, "o", "\u001b[32mrule resample_native_to_crop:\r\n    input: hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/anat/sub-1425_hemi-L_space-cropT1w_desc-preproc_T1w.nii.gz\r\n    jobid: 177\r\n    reason: Missing output files: hippunfold/sub-1425/anat/sub-1425_hemi-L_space-cropT1w_desc-preproc_T1w.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz, hippunfold/sub-1425/anat/sub-1425_desc-preproc_T1w.nii.gz\r\n    wildcards: subject=1425, hemi=L, native_modality=T1w\r\n    resources: tmpdir=/tmp\u001b[0m"]
[1358.118195, "o", "\r\n"]
[1358.118269, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.123468, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.123625, "o", "\u001b[32m[Fri Nov 25 21:17:07 2022]\u001b[0m\r\n"]
[1358.123896, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz\r\n"]
[1358.12399, "o", "    jobid: 152\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-corobl_label-dentate_desc-laplace_coords.nii.gz\r\n    wildcards: subject=1425, dir=AP, hemi=L, native_modality=T1w, autotop=dentate, desc=laplace\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1358.124104, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.126498, "o", "\u001b[32m\u001b[0m\r\n"]
[1358.130052, "o", "\u001b[32m[Fri Nov 25 21:17:07 2022]\u001b[0m\r\n"]
[1358.130407, "o", "\u001b[32mrule resample_coords_native_crop:\r\n    input: work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-hipp_desc-equivol_coords.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz\r\n    output: hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-cropT1w_label-hipp_desc-equivol_coords.nii.gz\r\n    jobid: 167\r\n    reason: Missing output files: hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-cropT1w_label-hipp_desc-equivol_coords.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-corobl_label-hipp_desc-equivol_coords.nii.gz\r\n    wildcards: subject=1425, dir=IO, hemi=L, native_modality=T1w, autotop=hipp, desc=equivol\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1358.130489, "o", "\u001b[32m\u001b[0m\r\n"]
[1359.821307, "o", "\u001b[32m[Fri Nov 25 21:17:09 2022]\u001b[0m"]
[1359.821467, "o", "\r\n\u001b[32mFinished job 156.\u001b[0m\r\n"]
[1359.821686, "o", "\u001b[32m152 of 193 steps (79%) done\u001b[0m"]
[1359.821747, "o", "\r\n"]
[1359.87484, "o", "\u001b[32m[Fri Nov 25 21:17:09 2022]\u001b[0m\r\n"]
[1359.875015, "o", "\u001b[32mFinished job 154.\u001b[0m\r\n"]
[1359.875123, "o", "\u001b[32m153 of 193 steps (79%) done\u001b[0m"]
[1359.875418, "o", "\r\n"]
[1359.890389, "o", "\u001b[32m[Fri Nov 25 21:17:09 2022]\u001b[0m\r\n\u001b[32mFinished job 150.\u001b[0m"]
[1359.890558, "o", "\r\n"]
[1359.890636, "o", "\u001b[32m154 of 193 steps (80%) done\u001b[0m"]
[1359.890714, "o", "\r\n"]
[1359.928538, "o", "\u001b[32m[Fri Nov 25 21:17:09 2022]\u001b[0m\r\n"]
[1359.928704, "o", "\u001b[32mFinished job 165.\u001b[0m"]
[1359.928833, "o", "\r\n"]
[1359.929019, "o", "\u001b[32m155 of 193 steps (80%) done\u001b[0m"]
[1359.929103, "o", "\r\n"]
[1360.237995, "o", "\u001b[32m[Fri Nov 25 21:17:09 2022]\u001b[0m\r\n"]
[1360.238222, "o", "\u001b[32mFinished job 152.\u001b[0m"]
[1360.238328, "o", "\r\n"]
[1360.238659, "o", "\u001b[32m156 of 193 steps (81%) done\u001b[0m"]
[1360.238745, "o", "\r\n"]
[1360.261767, "o", "\u001b[32m[Fri Nov 25 21:17:09 2022]\u001b[0m\r\n"]
[1360.261982, "o", "\u001b[32mFinished job 158.\u001b[0m"]
[1360.26208, "o", "\r\n"]
[1360.262403, "o", "\u001b[32m157 of 193 steps (81%) done\u001b[0m"]
[1360.262493, "o", "\r\n"]
[1360.323666, "o", "\u001b[32m[Fri Nov 25 21:17:09 2022]\u001b[0m\r\n"]
[1360.323836, "o", "\u001b[32mFinished job 167.\u001b[0m"]
[1360.323936, "o", "\r\n"]
[1360.324276, "o", "\u001b[32m158 of 193 steps (82%) done\u001b[0m"]
[1360.324382, "o", "\r\n"]
[1363.826623, "o", "\u001b[32m[Fri Nov 25 21:17:13 2022]\u001b[0m"]
[1363.826763, "o", "\r\n"]
[1363.826878, "o", "\u001b[32mFinished job 174.\u001b[0m"]
[1363.826984, "o", "\r\n"]
[1363.827306, "o", "\u001b[32m159 of 193 steps (82%) done\u001b[0m"]
[1363.8274, "o", "\r\n"]
[1365.591039, "o", "\u001b[32m[Fri Nov 25 21:17:14 2022]\u001b[0m"]
[1365.591263, "o", "\r\n\u001b[32mFinished job 177.\u001b[0m"]
[1365.591374, "o", "\r\n"]
[1365.591669, "o", "\u001b[32m160 of 193 steps (83%) done\u001b[0m"]
[1365.591771, "o", "\r\n"]
[1372.057574, "o", "\u001b[32m[Fri Nov 25 21:17:21 2022]\u001b[0m"]
[1372.057623, "o", "\r\n"]
[1372.057815, "o", "\u001b[32mFinished job 9.\u001b[0m"]
[1372.057958, "o", "\r\n"]
[1372.058206, "o", "\u001b[32m161 of 193 steps (83%) done\u001b[0m"]
[1372.058357, "o", "\r\n"]
[1372.059081, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[1372.059212, "o", "\r\n"]
[1372.062082, "o", "\u001b[32m\u001b[0m"]
[1372.06223, "o", "\r\n"]
[1372.062362, "o", "\u001b[32m[Fri Nov 25 21:17:21 2022]\u001b[0m"]
[1372.062475, "o", "\r\n"]
[1372.062888, "o", "\u001b[32mrule warp_gii_unfold2native:"]
[1372.063061, "o", "\r\n"]
[1372.063097, "o", "    input: work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_midthickness.surf.gii"]
[1372.063221, "o", "\r\n"]
[1372.063315, "o", "    output: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_midthickness.surf.gii"]
[1372.063401, "o", "\r\n"]
[1372.063503, "o", "    jobid: 8\r\n"]
[1372.063643, "o", "    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_midthickness.surf.gii; Input files updated by another job: work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_midthickness.surf.gii, work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz"]
[1372.063735, "o", "\r\n"]
[1372.063808, "o", "    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=hipp, surfname=midthickness"]
[1372.063906, "o", "\r\n"]
[1372.064017, "o", "    resources: tmpdir=/tmp\u001b[0m"]
[1372.064148, "o", "\r\n"]
[1372.064453, "o", "\u001b[32m\u001b[0m"]
[1372.064538, "o", "\r\n"]
[1372.066516, "o", "\u001b[32m\u001b[0m"]
[1372.066656, "o", "\r\n"]
[1372.068935, "o", "\u001b[32m[Fri Nov 25 21:17:21 2022]\u001b[0m"]
[1372.069131, "o", "\r\n"]
[1372.069219, "o", "\u001b[32mrule warp_gii_unfold2native:\r\n"]
[1372.069312, "o", "    input: work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_inner.surf.gii\r\n"]
[1372.069367, "o", "    output: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_inner.surf.gii"]
[1372.069531, "o", "\r\n    jobid: 44\r\n    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_inner.surf.gii; Input files updated by another job: work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_inner.surf.gii, work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz\r\n"]
[1372.069583, "o", "    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=hipp, surfname=inner"]
[1372.069688, "o", "\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1372.069801, "o", "\u001b[32m\u001b[0m\r\n"]
[1372.071787, "o", "\u001b[32m\u001b[0m"]
[1372.071878, "o", "\r\n"]
[1372.07605, "o", "\u001b[32m[Fri Nov 25 21:17:21 2022]\u001b[0m"]
[1372.076165, "o", "\r\n"]
[1372.076258, "o", "\u001b[32mrule compose_warps_unfold_to_crop_native:"]
[1372.076355, "o", "\r\n    input: work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-corobl_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz"]
[1372.076443, "o", "\r\n    output: hippunfold/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-T1w_mode-image_xfm.nii.gz\r\n"]
[1372.07651, "o", "    log: logs/sub-1425/sub-1425_hemi-L_label-hipp_from-unfold_to-T1w_mode-image_composexfm.txt"]
[1372.076585, "o", "\r\n    jobid: 173"]
[1372.076642, "o", "\r\n"]
[1372.076712, "o", "    reason: Missing output files: hippunfold/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-T1w_mode-image_xfm.nii.gz; Input files updated by another job: work/sub-1425/warps/sub-1425_hemi-L_space-T1w_cropref.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt, work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-corobl_mode-image_xfm.nii.gz"]
[1372.076805, "o", "\r\n    wildcards: subject=1425, hemi=L, autotop=hipp, native_modality=T1w"]
[1372.076888, "o", "\r\n"]
[1372.076961, "o", "    resources: tmpdir=/tmp\u001b[0m"]
[1372.077577, "o", "\r\n"]
[1372.077705, "o", "\u001b[32m\u001b[0m"]
[1372.077803, "o", "\r\n"]
[1372.082976, "o", "\u001b[32m\u001b[0m\r\n"]
[1372.083134, "o", "\u001b[32m[Fri Nov 25 21:17:21 2022]\u001b[0m"]
[1372.083209, "o", "\r\n"]
[1372.083408, "o", "\u001b[32mrule warp_gii_unfold2native:"]
[1372.083503, "o", "\r\n    input: work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz, work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_outer.surf.gii\r\n"]
[1372.083585, "o", "    output: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_outer.surf.gii\r\n    jobid: 49"]
[1372.083692, "o", "\r\n"]
[1372.083746, "o", "    reason: Missing output files: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_outer.surf.gii; Input files updated by another job: work/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_desc-constrainbbox_outer.surf.gii, work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-corobl_mode-surface_xfm.nii.gz"]
[1372.083872, "o", "\r\n"]
[1372.083966, "o", "    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=hipp, surfname=outer"]
[1372.084047, "o", "\r\n"]
[1372.084118, "o", "    resources: tmpdir=/tmp\u001b[0m"]
[1372.084206, "o", "\r\n"]
[1372.084279, "o", "\u001b[32m\u001b[0m\r\n"]
[1372.086905, "o", "\u001b[32m\u001b[0m"]
[1372.086986, "o", "\r\n"]
[1372.09144, "o", "\u001b[32m[Fri Nov 25 21:17:21 2022]\u001b[0m"]
[1372.091547, "o", "\r\n"]
[1372.091655, "o", "\u001b[32mrule compose_warps_native_to_unfold:"]
[1372.091749, "o", "\r\n    input: work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-corobl_to-unfold_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt"]
[1372.091867, "o", "\r\n    output: hippunfold/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-T1w_to-unfold_mode-image_xfm.nii.gz"]
[1372.091997, "o", "\r\n    log: logs/sub-1425/sub-1425_hemi-L_label-hipp_from-T1w_to-unfold_mode-image_composexfm.txt\r\n    jobid: 169\r\n"]
[1372.092097, "o", "    reason: Missing output files: hippunfold/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-T1w_to-unfold_mode-image_xfm.nii.gz; Input files updated by another job: hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, work/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-corobl_to-unfold_mode-image_xfm.nii.gz, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-itk_xfm.txt\r\n    wildcards: subject=1425, hemi=L, autotop=hipp, native_modality=T1w"]
[1372.092185, "o", "\r\n    resources: tmpdir=/tmp\u001b[0m"]
[1372.092269, "o", "\r\n"]
[1372.092345, "o", "\u001b[32m\u001b[0m"]
[1372.092417, "o", "\r\n"]
[1372.283671, "o", "\u001b[32m[Fri Nov 25 21:17:21 2022]\u001b[0m\r\n"]
[1372.283808, "o", "\u001b[32mFinished job 8.\u001b[0m"]
[1372.283875, "o", "\r\n"]
[1372.284104, "o", "\u001b[32m162 of 193 steps (84%) done\u001b[0m"]
[1372.284166, "o", "\r\n"]
[1372.284687, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[1372.28477, "o", "\r\n"]
[1372.285927, "o", "\u001b[32m\u001b[0m"]
[1372.286018, "o", "\r\n"]
[1372.286188, "o", "\u001b[32m[Fri Nov 25 21:17:21 2022]\u001b[0m"]
[1372.286261, "o", "\r\n"]
[1372.286508, "o", "\u001b[32mrule correct_nan_vertices:"]
[1372.286609, "o", "\r\n"]
[1372.286703, "o", "    input: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_midthickness.surf.gii\r\n"]
[1372.286789, "o", "    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_midthickness.surf.gii\r\n"]
[1372.28688, "o", "    jobid: 7"]
[1372.286976, "o", "\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_midthickness.surf.gii; Input files updated by another job: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_midthickness.surf.gii\r\n"]
[1372.287065, "o", "    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=hipp, surfname=midthickness"]
[1372.287157, "o", "\r\n    resources: tmpdir=/tmp\u001b[0m"]
[1372.287235, "o", "\r\n"]
[1372.287366, "o", "\u001b[32m\u001b[0m"]
[1372.287436, "o", "\r\n"]
[1372.296824, "o", "\u001b[32m[Fri Nov 25 21:17:21 2022]\u001b[0m"]
[1372.296945, "o", "\r\n"]
[1372.297263, "o", "\u001b[32mFinished job 49.\u001b[0m"]
[1372.297418, "o", "\r\n"]
[1372.297512, "o", "\u001b[32m163 of 193 steps (84%) done\u001b[0m\r\n"]
[1372.29787, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[1372.297971, "o", "\r\n"]
[1372.298913, "o", "\u001b[32m\u001b[0m"]
[1372.299027, "o", "\r\n"]
[1372.299106, "o", "\u001b[32m[Fri Nov 25 21:17:21 2022]\u001b[0m\r\n"]
[1372.299258, "o", "\u001b[32mrule correct_nan_vertices:"]
[1372.299333, "o", "\r\n    input: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_outer.surf.gii\r\n"]
[1372.299408, "o", "    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_outer.surf.gii\r\n"]
[1372.299476, "o", "    jobid: 48\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_outer.surf.gii; Input files updated by another job: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_outer.surf.gii"]
[1372.29958, "o", "\r\n    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=hipp, surfname=outer"]
[1372.299652, "o", "\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1372.299749, "o", "\u001b[32m\u001b[0m"]
[1372.299838, "o", "\r\n"]
[1372.310553, "o", "\u001b[32m[Fri Nov 25 21:17:21 2022]\u001b[0m\r\n"]
[1372.310759, "o", "\u001b[32mFinished job 44.\u001b[0m\r\n"]
[1372.310896, "o", "\u001b[32m164 of 193 steps (85%) done\u001b[0m\r\n"]
[1372.311442, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1372.312189, "o", "\u001b[32m\u001b[0m\r\n"]
[1372.312351, "o", "\u001b[32m[Fri Nov 25 21:17:21 2022]\u001b[0m"]
[1372.312468, "o", "\r\n"]
[1372.312626, "o", "\u001b[32mrule correct_nan_vertices:"]
[1372.312703, "o", "\r\n"]
[1372.312793, "o", "    input: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_inner.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_inner.surf.gii"]
[1372.312893, "o", "\r\n"]
[1372.313007, "o", "    jobid: 43\r\n"]
[1372.313444, "o", "    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_inner.surf.gii; Input files updated by another job: work/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_desc-nonancorrect_inner.surf.gii"]
[1372.313565, "o", "\r\n    wildcards: subject=1425, hemi=L, density=0p5mm, autotop=hipp, surfname=inner"]
[1372.31371, "o", "\r\n    resources: tmpdir=/tmp\u001b[0m"]
[1372.313802, "o", "\r\n"]
[1372.31393, "o", "\u001b[32m\u001b[0m"]
[1372.314024, "o", "\r\n"]
[1372.663829, "o", "\u001b[32m[Fri Nov 25 21:17:21 2022]\u001b[0m"]
[1372.663993, "o", "\r\n"]
[1372.664112, "o", "\u001b[32mFinished job 169.\u001b[0m\r\n"]
[1372.664442, "o", "\u001b[32m165 of 193 steps (85%) done\u001b[0m"]
[1372.665136, "o", "\r\n"]
[1372.814853, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1372.815035, "o", "\u001b[32mFinished job 7.\u001b[0m\r\n"]
[1372.815198, "o", "\u001b[32m166 of 193 steps (86%) done\u001b[0m"]
[1372.815289, "o", "\r\n"]
[1372.815709, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[1372.815786, "o", "\r\n"]
[1372.816605, "o", "\u001b[32m\u001b[0m"]
[1372.816693, "o", "\r\n"]
[1372.81704, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m"]
[1372.817107, "o", "\r\n"]
[1372.817367, "o", "\u001b[32mrule warp_gii_to_native:"]
[1372.817426, "o", "\r\n"]
[1372.817525, "o", "    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_midthickness.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt"]
[1372.817595, "o", "\r\n"]
[1372.817678, "o", "    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii"]
[1372.817753, "o", "\r\n"]
[1372.817829, "o", "    jobid: 6"]
[1372.817901, "o", "\r\n"]
[1372.817998, "o", "    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_midthickness.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt"]
[1372.818064, "o", "\r\n"]
[1372.818151, "o", "    wildcards: subject=1425, hemi=L, native_modality=T1w, density=0p5mm, autotop=hipp, surfname=midthickness"]
[1372.818227, "o", "\r\n"]
[1372.818304, "o", "    resources: tmpdir=/tmp\u001b[0m"]
[1372.818399, "o", "\r\n"]
[1372.81862, "o", "\u001b[32m\u001b[0m"]
[1372.818691, "o", "\r\n"]
[1372.929287, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1372.929507, "o", "\u001b[32mFinished job 48.\u001b[0m"]
[1372.929627, "o", "\r\n"]
[1372.929826, "o", "\u001b[32m167 of 193 steps (87%) done\u001b[0m"]
[1372.929944, "o", "\r\n"]
[1372.930462, "o", "\u001b[33mSelect jobs to execute...\u001b[0m"]
[1372.930575, "o", "\r\n"]
[1372.931449, "o", "\u001b[32m\u001b[0m"]
[1372.931565, "o", "\r\n"]
[1372.931736, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m"]
[1372.931854, "o", "\r\n"]
[1372.932077, "o", "\u001b[32mrule warp_gii_to_native:"]
[1372.932194, "o", "\r\n"]
[1372.932261, "o", "    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_outer.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt"]
[1372.932329, "o", "\r\n"]
[1372.93242, "o", "    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_outer.surf.gii\r\n"]
[1372.932535, "o", "    jobid: 47"]
[1372.9327, "o", "\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_outer.surf.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_outer.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt"]
[1372.933191, "o", "\r\n"]
[1372.933226, "o", "    wildcards: subject=1425, hemi=L, native_modality=T1w, density=0p5mm, autotop=hipp, surfname=outer"]
[1372.933304, "o", "\r\n"]
[1372.933496, "o", "    resources: tmpdir=/tmp\u001b[0m"]
[1372.933632, "o", "\r\n"]
[1372.933839, "o", "\u001b[32m\u001b[0m"]
[1372.933965, "o", "\r\n"]
[1372.941149, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m"]
[1372.941325, "o", "\r\n\u001b[32mFinished job 43.\u001b[0m"]
[1372.941423, "o", "\r\n"]
[1372.94174, "o", "\u001b[32m168 of 193 steps (87%) done\u001b[0m"]
[1372.941846, "o", "\r\n"]
[1372.942564, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1372.943417, "o", "\u001b[32m\u001b[0m"]
[1372.943486, "o", "\r\n"]
[1372.943605, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m"]
[1372.943675, "o", "\r\n"]
[1372.943844, "o", "\u001b[32mrule warp_gii_to_native:"]
[1372.943947, "o", "\r\n"]
[1372.94403, "o", "    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_inner.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt"]
[1372.944129, "o", "\r\n"]
[1372.944215, "o", "    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_inner.surf.gii"]
[1372.944309, "o", "\r\n"]
[1372.944383, "o", "    jobid: 42"]
[1372.9445, "o", "\r\n"]
[1372.944627, "o", "    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_inner.surf.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-corobl_den-0p5mm_label-hipp_inner.surf.gii, work/sub-1425/warps/sub-1425_desc-affine_from-T1w_to-corobl_type-ras_xfm.txt"]
[1372.944744, "o", "\r\n"]
[1372.948837, "o", "    wildcards: subject=1425, hemi=L, native_modality=T1w, density=0p5mm, autotop=hipp, surfname=inner\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1372.955331, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n\u001b[32mFinished job 6.\u001b[0m\r\n"]
[1372.955484, "o", "\u001b[32m169 of 193 steps (88%) done\u001b[0m\r\n"]
[1372.956065, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1372.957954, "o", "\u001b[32m\u001b[0m\r\n"]
[1372.958052, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1372.958236, "o", "\u001b[32mrule smooth_surface:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_desc-smoothed_midthickness.surf.gii\r\n    jobid: 40\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_desc-smoothed_midthickness.surf.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=L, space=T1w, density=0p5mm, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1372.958422, "o", "\u001b[32m\u001b[0m\r\n"]
[1372.959872, "o", "\u001b[32m\u001b[0m\r\n"]
[1372.966212, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1372.96652, "o", "\u001b[32mrule calculate_surface_area:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_surfarea.shape.gii\r\n    jobid: 5\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_surfarea.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=L, space=T1w, density=0p5mm, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m"]
[1372.966698, "o", "\r\n"]
[1372.966851, "o", "\u001b[32m\u001b[0m\r\n"]
[1372.97446, "o", "\u001b[32m\u001b[0m\r\n"]
[1372.97741, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1372.977716, "o", "\u001b[32mrule qc_subfield_surf:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/qc/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_desc-subfields_midthickness.surf.png\r\n    jobid: 182\r\n"]
[1372.977869, "o", "    reason: Missing output files: hippunfold/sub-1425/qc/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_desc-subfields_midthickness.surf.png; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=L, ref_spaces=T1w, density=0p5mm, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1373.036907, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1373.037069, "o", "\u001b[32mFinished job 5.\u001b[0m\r\n"]
[1373.037224, "o", "\u001b[32m170 of 193 steps (88%) done\u001b[0m\r\n"]
[1373.037612, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1373.038281, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.038374, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1373.03862, "o", "\u001b[32mrule calculate_gyrification:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_surfarea.shape.gii, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/unfold_template_hipp/tpl-avg_space-unfold_den-0p5mm_surfarea.shape.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_gyrification.shape.gii\r\n    log: logs/sub-1425/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_calcgyrification.txt\r\n    jobid: 4\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_gyrification.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_surfarea.shape.gii\r\n    wildcards: subject=1425, hemi=L, space=T1w, density=0p5mm, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m"]
[1373.03869, "o", "\r\n\u001b[32m\u001b[0m\r\n"]
[1373.044508, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1373.045193, "o", "\u001b[32mFinished job 42.\u001b[0m\r\n"]
[1373.04528, "o", "\u001b[32m171 of 193 steps (89%) done\u001b[0m\r\n"]
[1373.046587, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1373.046679, "o", "\u001b[32mFinished job 47.\u001b[0m\r\n"]
[1373.046754, "o", "\u001b[32m172 of 193 steps (89%) done\u001b[0m\r\n"]
[1373.046957, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1373.047512, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.047588, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1373.047805, "o", "\u001b[32mrule calculate_thickness_from_surface:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_inner.surf.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_outer.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_thickness.shape.gii\r\n    jobid: 41\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_thickness.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_inner.surf.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_outer.surf.gii\r\n    wildcards: subject=1425, hemi=L, space=T1w, density=0p5mm, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1373.047898, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.091579, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n\u001b[32mFinished job 4.\u001b[0m\r\n"]
[1373.091742, "o", "\u001b[32m173 of 193 steps (90%) done\u001b[0m\r\n"]
[1373.092051, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1373.093134, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.093244, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1373.093467, "o", "\u001b[32mrule create_dscalar_metric_cifti:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_gyrification.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_gyrification.shape.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_gyrification.dscalar.nii\r\n"]
[1373.093522, "o", "    jobid: 54\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_gyrification.dscalar.nii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_gyrification.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_gyrification.shape.gii\r\n    wildcards: subject=1425, space=T1w, density=0p5mm, autotop=hipp, metric=gyrification\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1373.093599, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.101621, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1373.101734, "o", "\u001b[32mFinished job 41.\u001b[0m\r\n"]
[1373.1018, "o", "\u001b[32m174 of 193 steps (90%) done\u001b[0m\r\n"]
[1373.102203, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1373.102846, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.102921, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1373.103207, "o", "\u001b[32mrule create_dscalar_metric_cifti:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_thickness.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_thickness.shape.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_thickness.dscalar.nii\r\n    jobid: 79\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_thickness.dscalar.nii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_thickness.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_thickness.shape.gii\r\n"]
[1373.103271, "o", "    wildcards: subject=1425, space=T1w, density=0p5mm, autotop=hipp, metric=thickness\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1373.103327, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.169407, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n\u001b[32mFinished job 54.\u001b[0m\r\n\u001b[32m175 of 193 steps (91%) done\u001b[0m\r\n"]
[1373.171852, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n\u001b[32mFinished job 79.\u001b[0m\r\n"]
[1373.171919, "o", "\u001b[32m176 of 193 steps (91%) done\u001b[0m\r\n"]
[1373.173738, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n\u001b[32mFinished job 40.\u001b[0m\r\n\u001b[32m177 of 193 steps (92%) done\u001b[0m\r\n"]
[1373.174104, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1373.174877, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.174932, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1373.175156, "o", "\u001b[32mrule calculate_curvature_from_surface:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_desc-smoothed_midthickness.surf.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_curvature.shape.gii\r\n    jobid: 39\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_curvature.shape.gii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_desc-smoothed_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=L, space=T1w, density=0p5mm, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1373.175223, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.23348, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n\u001b[32mFinished job 39.\u001b[0m\r\n"]
[1373.233675, "o", "\u001b[32m178 of 193 steps (92%) done\u001b[0m\r\n"]
[1373.234304, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1373.235532, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.235661, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1373.235889, "o", "\u001b[32mrule create_dscalar_metric_cifti:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_curvature.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_curvature.shape.gii\r\n    output: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_curvature.dscalar.nii\r\n    jobid: 76\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_curvature.dscalar.nii; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_curvature.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_curvature.shape.gii"]
[1373.236042, "o", "\r\n    wildcards: subject=1425, space=T1w, density=0p5mm, autotop=hipp, metric=curvature\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1373.236158, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.316498, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1373.316914, "o", "\u001b[32mFinished job 76.\u001b[0m\r\n"]
[1373.317137, "o", "\u001b[32m179 of 193 steps (93%) done\u001b[0m\r\n"]
[1373.317937, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1373.319901, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.320116, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1373.320594, "o", "\u001b[32mrule create_spec_file_hipp:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_gyrification.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_curvature.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_thickness.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.label.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_gyrification.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_curvature.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_thickness.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.dlabel.nii\r\n    output: hippunfold/su"]
[1373.32068, "o", "b-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_surfaces.spec\r\n    jobid: 3\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_surfaces.spec; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_thickness.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_gyrification.shape.gii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_gyrification.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-unfolded_den-0p5mm_label-hipp_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.label.gii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_thickness.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_curvature.dscalar.nii, hippunfold/sub-1425/"]
[1373.320794, "o", "surf/sub-1425_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.dlabel.nii, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_curvature.shape.gii\r\n    wildcards: subject=1425, hemi=L, space=T1w, density=0p5mm, label=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1373.325611, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.325713, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n"]
[1373.325964, "o", "\u001b[32mrule create_spec_file_hipp:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_gyrification.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_curvature.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_thickness.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.label.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_gyrification.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_curvature.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_thickness.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.dlabel.nii\r\n    output: hippunfold/su"]
[1373.326051, "o", "b-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_surfaces.spec\r\n    jobid: 94\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_surfaces.spec; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_thickness.shape.gii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_gyrification.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_midthickness.surf.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_gyrification.shape.gii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.label.gii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_thickness.dscalar.nii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_curvature.shape.gii, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_curvature.dscalar.nii, hippunfold/sub-1425/surf/s"]
[1373.32622, "o", "ub-1425_space-T1w_den-0p5mm_label-hipp_atlas-bigbrain_subfields.dlabel.nii, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-unfolded_den-0p5mm_label-hipp_midthickness.surf.gii\r\n    wildcards: subject=1425, hemi=R, space=T1w, density=0p5mm, label=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1373.67149, "o", "\u001b[32m[Fri Nov 25 21:17:22 2022]\u001b[0m\r\n\u001b[32mFinished job 3.\u001b[0m\r\n"]
[1373.67173, "o", "\u001b[32m180 of 193 steps (93%) done\u001b[0m\r\n"]
[1373.702752, "o", "\u001b[32m[Fri Nov 25 21:17:23 2022]\u001b[0m\r\n\u001b[32mFinished job 94.\u001b[0m\r\n"]
[1373.702919, "o", "\u001b[32m181 of 193 steps (94%) done\u001b[0m\r\n"]
[1373.703539, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1373.704793, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.704891, "o", "\u001b[32m[Fri Nov 25 21:17:23 2022]\u001b[0m\r\n"]
[1373.705243, "o", "\u001b[32mrule merge_lr_spec_file:\r\n    input: hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_surfaces.spec, hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_surfaces.spec\r\n    output: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_surfaces.spec\r\n"]
[1373.705351, "o", "    jobid: 2\r\n    reason: Missing output files: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_surfaces.spec; Input files updated by another job: hippunfold/sub-1425/surf/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_surfaces.spec, hippunfold/sub-1425/surf/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_surfaces.spec\r\n    wildcards: subject=1425, space=T1w, density=0p5mm, autotop=hipp\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1373.705428, "o", "\u001b[32m\u001b[0m\r\n"]
[1373.758528, "o", "\u001b[32m[Fri Nov 25 21:17:23 2022]\u001b[0m\r\n"]
[1373.758747, "o", "\u001b[32mFinished job 2.\u001b[0m\r\n\u001b[32m182 of 193 steps (94%) done\u001b[0m\r\n"]
[1374.411829, "o", "/opt/conda/lib/python3.9/site-packages/nilearn/datasets/__init__.py:93: FutureWarning: Fetchers from the nilearn.datasets module will be updated in version 0.9 to return python strings instead of bytes and Pandas dataframes instead of Numpy arrays.\r\n  warn(\"Fetchers from the nilearn.datasets module will be \"\r\n"]
[1375.156823, "o", "\u001b[32m[Fri Nov 25 21:17:24 2022]\u001b[0m\r\n"]
[1375.157057, "o", "\u001b[32mFinished job 182.\u001b[0m\r\n\u001b[32m183 of 193 steps (95%) done\u001b[0m\r\n"]
[1382.734215, "o", "\u001b[32m[Fri Nov 25 21:17:32 2022]\u001b[0m\r\n\u001b[32mFinished job 175.\u001b[0m\r\n"]
[1382.734437, "o", "\u001b[32m184 of 193 steps (95%) done\u001b[0m\r\n"]
[1391.759765, "o", "\u001b[32m[Fri Nov 25 21:17:41 2022]\u001b[0m\r\n\u001b[32mFinished job 145.\u001b[0m\r\n\u001b[32m185 of 193 steps (96%) done\u001b[0m\r\n\u001b[33mSelect jobs to execute...\u001b[0m\r\n\u001b[32m\u001b[0m\r\n\u001b[32m[Fri Nov 25 21:17:41 2022]\u001b[0m\r\n\u001b[32mrule qc_subfield:\r\n    input: hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-preproc_T1w.nii.gz, hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    output: hippunfold/sub-1425/qc/sub-1425_hemi-R_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.png\r\n    jobid: 181\r\n    reason: Missing output files: hippunfold/sub-1425/qc/sub-1425_hemi-R_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.png; Input files updated by another job: hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-preproc_T1w.nii.gz, hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    wildcards: subject=1425, hemi=R, space=cropT1w, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1393.043747, "o", "/opt/conda/lib/python3.9/site-packages/nilearn/datasets/__init__.py:93: FutureWarning: Fetchers from the nilearn.datasets module will be updated in version 0.9 to return python strings instead of bytes and Pandas dataframes instead of Numpy arrays.\r\n  warn(\"Fetchers from the nilearn.datasets module will be \"\r\n"]
[1395.703619, "o", "\u001b[32m[Fri Nov 25 21:17:45 2022]\u001b[0m\r\n\u001b[32mFinished job 173.\u001b[0m\r\n"]
[1395.703845, "o", "\u001b[32m186 of 193 steps (96%) done\u001b[0m\r\n"]
[1410.492741, "o", "\u001b[32m[Fri Nov 25 21:17:59 2022]\u001b[0m\r\n"]
[1410.493014, "o", "\u001b[32mFinished job 181.\u001b[0m\r\n"]
[1410.493146, "o", "\u001b[32m187 of 193 steps (97%) done\u001b[0m\r\n"]
[1420.903301, "o", "\u001b[32m[Fri Nov 25 21:18:10 2022]\u001b[0m\r\n"]
[1420.903529, "o", "\u001b[32mFinished job 139.\u001b[0m\r\n\u001b[32m188 of 193 steps (97%) done\u001b[0m\r\n"]
[1420.904322, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1420.906145, "o", "\u001b[32m\u001b[0m\r\n"]
[1420.906324, "o", "\u001b[32m[Fri Nov 25 21:18:10 2022]\u001b[0m\r\n"]
[1420.906806, "o", "\u001b[32mrule qc_subfield:\r\n"]
[1420.906984, "o", "    input: hippunfold/sub-1425/anat/sub-1425_hemi-L_space-cropT1w_desc-preproc_T1w.nii.gz, hippunfold/sub-1425/anat/sub-1425_hemi-L_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    output: hippunfold/sub-1425/qc/sub-1425_hemi-L_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.png\r\n    jobid: 180\r\n    reason: Missing output files: hippunfold/sub-1425/qc/sub-1425_hemi-L_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.png; Input files updated by another job: hippunfold/sub-1425/anat/sub-1425_hemi-L_space-cropT1w_desc-preproc_T1w.nii.gz, hippunfold/sub-1425/anat/sub-1425_hemi-L_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    wildcards: subject=1425, hemi=L, space=cropT1w, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1420.908577, "o", "\u001b[32m[Fri Nov 25 21:18:10 2022]\u001b[0m\r\n"]
[1420.909162, "o", "\u001b[32mrule get_subfield_vols_subj:\r\n    input: hippunfold/sub-1425/anat/sub-1425_hemi-L_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz, hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz, /opt/conda/lib/python3.9/site-packages/hippunfold/workflow/../resources/desc-subfields_atlas-bigbrain_dseg.tsv\r\n    output: hippunfold/sub-1425/anat/sub-1425_space-cropT1w_desc-subfields_atlas-bigbrain_volumes.tsv\r\n    jobid: 187\r\n"]
[1420.909345, "o", "    reason: Missing output files: hippunfold/sub-1425/anat/sub-1425_space-cropT1w_desc-subfields_atlas-bigbrain_volumes.tsv; Input files updated by another job: hippunfold/sub-1425/anat/sub-1425_hemi-L_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz, hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz\r\n    wildcards: subject=1425, crop_ref_spaces=cropT1w, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1420.909923, "o", "\u001b[32m\u001b[0m\r\n"]
[1422.21754, "o", "/opt/conda/lib/python3.9/site-packages/nilearn/datasets/__init__.py:93: FutureWarning: Fetchers from the nilearn.datasets module will be updated in version 0.9 to return python strings instead of bytes and Pandas dataframes instead of Numpy arrays.\r\n  warn(\"Fetchers from the nilearn.datasets module will be \"\r\n"]
[1422.906484, "o", "\u001b[32m[Fri Nov 25 21:18:12 2022]\u001b[0m\r\n\u001b[32mFinished job 187.\u001b[0m\r\n"]
[1422.906714, "o", "\u001b[32m189 of 193 steps (98%) done\u001b[0m\r\n"]
[1422.907665, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1422.909093, "o", "\u001b[32m\u001b[0m\r\n"]
[1422.909271, "o", "\u001b[32m[Fri Nov 25 21:18:12 2022]\u001b[0m\r\n"]
[1422.909715, "o", "\u001b[32mrule plot_subj_subfields:\r\n    input: hippunfold/sub-1425/anat/sub-1425_space-cropT1w_desc-subfields_atlas-bigbrain_volumes.tsv\r\n    output: hippunfold/sub-1425/qc/sub-1425_space-cropT1w_desc-subfields_atlas-bigbrain_volumes.png\r\n    jobid: 186\r\n    reason: Missing output files: hippunfold/sub-1425/qc/sub-1425_space-cropT1w_desc-subfields_atlas-bigbrain_volumes.png; Input files updated by another job: hippunfold/sub-1425/anat/sub-1425_space-cropT1w_desc-subfields_atlas-bigbrain_volumes.tsv\r\n    wildcards: subject=1425, crop_ref_spaces=cropT1w, atlas=bigbrain\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1422.909852, "o", "\u001b[32m\u001b[0m\r\n"]
[1424.047458, "o", "\u001b[32m[Fri Nov 25 21:18:13 2022]\u001b[0m\r\n\u001b[32mFinished job 186.\u001b[0m\r\n"]
[1424.047733, "o", "\u001b[32m190 of 193 steps (98%) done\u001b[0m\r\n"]
[1439.578794, "o", "\u001b[32m[Fri Nov 25 21:18:28 2022]\u001b[0m\r\n\u001b[32mFinished job 180.\u001b[0m\r\n\u001b[32m191 of 193 steps (99%) done\u001b[0m\r\n"]
[1439.579611, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1439.58221, "o", "\u001b[32m\u001b[0m\r\n"]
[1439.58242, "o", "\u001b[32m[Fri Nov 25 21:18:28 2022]\u001b[0m\r\n"]
[1439.582673, "o", "\u001b[32mrule archive_work_after_final:\r\n    input: hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_surfaces.spec, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_surfaces.spec, hippunfold/sub-1425/anat/sub-1425_hemi-L_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz, hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-cropT1w_label-hipp_desc-laplace_coords.n"]
[1439.582844, "o", "ii.gz, hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-cropT1w_label-hipp_desc-equivol_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-cropT1w_label-hipp_desc-equivol_coords.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-T1w_to-unfold_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-T1w_to-unfold_mode-image_xfm"]
[1439.583005, "o", ".nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-T1w_to-unfold_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-T1w_to-unfold_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-T1w_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-T1w_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-unfold_to-T1w_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-unfold_to-T1w_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentate_refvol.nii.gz, hippunfold/sub-1425/anat/sub-1425_hemi-L_space-cropT1w_desc-preproc_T1w.nii.gz, hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-preproc_T1w.nii.gz, hippunfold/sub-1425/qc/sub-1425_from-T1w_to-CITI168_regqc.png, hippunfold/sub-1425/qc/sub-1425_hemi-L_space-cropT1w_desc-s"]
[1439.583123, "o", "ubfields_atlas-bigbrain_dseg.png, hippunfold/sub-1425/qc/sub-1425_hemi-R_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.png, hippunfold/sub-1425/qc/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_desc-subfields_midthickness.surf.png, hippunfold/sub-1425/qc/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_desc-subfields_midthickness.surf.png, hippunfold/sub-1425/qc/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_desc-subfields_midthickness.surf.png, hippunfold/sub-1425/qc/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_desc-subfields_midthickness.surf.png, hippunfold/sub-1425/qc/sub-1425_space-cropT1w_desc-subfields_atlas-bigbrain_volumes.png, hippunfold/sub-1425/qc/sub-1425_hemi-L_desc-unetf3d_dice.tsv, hippunfold/sub-1425/qc/sub-1425_hemi-R_desc-unetf3d_dice.tsv\r\n    output: work/sub-1425_work.tar.gz\r\n    jobid: 1\r\n    reason: Missing output files: work/sub-1425_work.tar.gz; Input files updated by another job: hippunfold/sub-1425/qc/sub-1425_hemi-R_space-T1w_den-0p5mm_label-dentate_desc-subfields_midthick"]
[1439.583216, "o", "ness.surf.png, hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz, hippunfold/sub-1425/qc/sub-1425_hemi-R_desc-unetf3d_dice.tsv, hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-T1w_to-unfold_mode-image_xfm.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-hipp_surfaces.spec, hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-R_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-T1w_to-unfold_mode-image_xfm.nii.gz, hippunfold/sub-1425/qc/sub-1425_hemi-R_space-T1w_den-0p5mm_label-hipp_desc-subfields_midthickness.surf.png, hippunfold/sub-1425/anat/sub-1425_hemi-L_space-c"]
[1439.583299, "o", "ropT1w_desc-preproc_T1w.nii.gz, hippunfold/sub-1425/qc/sub-1425_hemi-R_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.png, hippunfold/sub-1425/qc/sub-1425_space-cropT1w_desc-subfields_atlas-bigbrain_volumes.png, hippunfold/sub-1425/surf/sub-1425_space-T1w_den-0p5mm_label-dentate_surfaces.spec, hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-L_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz, hippunfold/sub-1425/qc/sub-1425_from-T1w_to-CITI168_regqc.png, hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz, hippunfold/sub-1425/qc/sub-1425_hemi-L_space-T1w_den-0p5mm_label-hipp_desc-subfields_midthickness.surf.png, hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-preproc_T1w.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-L_label-dentate_from-unfold_to-T1w_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-dentat"]
[1439.583372, "o", "e_refvol.nii.gz, hippunfold/sub-1425/qc/sub-1425_hemi-L_desc-unetf3d_dice.tsv, hippunfold/sub-1425/warps/sub-1425_space-unfold_label-hipp_refvol.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-cropT1w_label-hipp_desc-equivol_coords.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-L_space-cropT1w_label-hipp_desc-equivol_coords.nii.gz, hippunfold/sub-1425/anat/sub-1425_hemi-R_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-AP_hemi-L_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-T1w_to-unfold_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-unfold_to-T1w_mode-image_xfm.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-cropT1w_label-dentate_desc-laplace_coords.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-R_label-hipp_from-T1w_to-unfold_mode-image_xfm.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-PD_hemi-R_space-cropT1w_label-"]
[1439.583448, "o", "dentate_desc-laplace_coords.nii.gz, hippunfold/sub-1425/anat/sub-1425_hemi-L_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.nii.gz, hippunfold/sub-1425/coords/sub-1425_dir-IO_hemi-R_space-cropT1w_label-hipp_desc-laplace_coords.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-R_label-dentate_from-unfold_to-T1w_mode-image_xfm.nii.gz, hippunfold/sub-1425/warps/sub-1425_hemi-L_label-hipp_from-unfold_to-T1w_mode-image_xfm.nii.gz, hippunfold/sub-1425/qc/sub-1425_hemi-L_space-T1w_den-0p5mm_label-dentate_desc-subfields_midthickness.surf.png, hippunfold/sub-1425/qc/sub-1425_hemi-L_space-cropT1w_desc-subfields_atlas-bigbrain_dseg.png\r\n    wildcards: subject=1425\r\n    resources: tmpdir=/tmp\u001b[0m\r\n\u001b[32m\u001b[0m\r\n"]
[1446.625886, "o", "\u001b[32m[Fri Nov 25 21:18:35 2022]\u001b[0m\r\n\u001b[32mFinished job 1.\u001b[0m\r\n"]
[1446.62597, "o", "\u001b[32m192 of 193 steps (99%) done\u001b[0m\r\n"]
[1446.627314, "o", "\u001b[33mSelect jobs to execute...\u001b[0m\r\n"]
[1446.628541, "o", "\u001b[32m\u001b[0m\r\n"]
[1446.628707, "o", "\u001b[32m[Fri Nov 25 21:18:35 2022]\u001b[0m\r\n"]
[1446.62886, "o", "\u001b[32mlocalrule all:\r\n    input: work/sub-1425_work.tar.gz\r\n    jobid: 0\r\n    reason: Input files updated by another job: work/sub-1425_work.tar.gz\r\n    resources: tmpdir=/tmp\u001b[0m\r\n"]
[1446.628957, "o", "\u001b[32m\u001b[0m\r\n"]
[1446.630398, "o", "\u001b[32m[Fri Nov 25 21:18:35 2022]\u001b[0m\r\n"]
[1446.630546, "o", "\u001b[32mFinished job 0.\u001b[0m\r\n"]
[1446.630638, "o", "\u001b[32m193 of 193 steps (100%) done\u001b[0m\r\n"]
[1446.63711, "o", "\u001b[33mComplete log: .snakemake/log/2022-11-25T205522.031978.snakemake.log\u001b[0m\r\n"]
[1447.818356, "o", "\u001b]0;vagrant@vagrant: /vagrant\u0007\u001b[01;32mvagrant@vagrant\u001b[00m:\u001b[01;34m/vagrant\u001b[00m$ "]
[2448.934791, "o", "logout\r\n"]
[2448.938009, "o", "Connection to 127.0.0.1 closed.\r\r\n"]
[2448.940937, "o", "\u001b]0;alik@neuron: ~/working_dir\u0007\u001b[01;32malik@neuron\u001b[00m:\u001b[01;34m~/working_dir\u001b[00m$ "]
[2449.417841, "o", "exit\r\n"]