[tool.poetry]

name = "hippunfold"

version = "1.5.2-pre.2"

description = "BIDS App for Hippocampal AutoTop (automated hippocampal unfolding and subfield segmentation)"

authors = ["Jordan DeKraker & Ali Khan <alik@robarts.ca>"]

[tool.poetry.dependencies]

python = ">=3.8,<3.10"

snakemake = ">=6.0.0"

snakebids = "^0.8.1"

appdirs = "^1.4.4"

Jinja2 = "^3.0.3"

pygraphviz = "1.7"

Pygments = "^2.10.0"

pulp = "<2.8.0"

[tool.poetry.dev-dependencies]

flake8 = "^4.0.1"

pytest-console-scripts = "^1.2.1"

pytest = "^6.2.5"

black = ">=22.1.0,<23.0.0"

pylint = "^2.11.1"

isort = "^5.10.1"

poethepoet = "^0.10.0"

snakefmt = ">=0.5.0"

[tool.poetry.scripts]

hippunfold = "hippunfold.run:main"

[build-system]

requires = ["poetry-core>=1.0.0"]

build-backend = "poetry.core.masonry.api"

[tool.poe.tasks]

quality_check = { shell = "isort hippunfold/*.py -c && black hippunfold --check && snakefmt hippunfold --check" }

quality_fix = { shell = "isort hippunfold/*.py && black hippunfold  && snakefmt hippunfold" }

[tool.isort]

profile = "black"

multi_line_output = 3

[tool.pylint.master]

ignore-patterns = "^[0-9][0-9]+_,^test_"

[tool.pylint.format]

good-names = "i,j,k,ex,_,x,y,f,d"

[tool.pylint.messages_control]

disable = """

    missing-function-docstring,

    missing-module-docstring,

    fixme

"""