strict digraph "" {
graph [bgcolor=white,
margin=0
];
node [fontname=sans,
fontsize=10,
penwidth=2,
shape=box,
style=rounded
];
edge [color=grey,
penwidth=2
];
subgraph cluster_0 {
graph [color=blue,
label=preproc_hippb500
];
}
subgraph cluster_4 {
graph [color=blue,
label=preproc_cropseg
];
}
subgraph cluster_1 {
graph [color=blue,
label=preproc_t1
];
15 [color="0.20 0.6 0.85",
label=warp_t1_to_corobl_crop];
16 [color="0.26 0.6 0.85",
label=n4_t1];
16 -> 15;
20 [color="0.25 0.6 0.85",
label=reg_to_template];
16 -> 20;
17 [color="0.54 0.6 0.85",
label=import_t1];
17 -> 16;
18 [color="0.00 0.6 0.85",
label=compose_template_xfm_corobl];
18 -> 15;
29 [color="0.38 0.6 0.85",
label=template_xfm_itk2ras];
18 -> 29;
19 [color="0.64 0.6 0.85",
label=convert_template_xfm_ras2itk];
19 -> 18;
20 -> 19;
}
subgraph cluster_2 {
graph [color=blue,
label=warps
];
7 [color="0.57 0.6 0.85",
label=create_warps_hipp];
42 [color="0.49 0.6 0.85",
label=compose_warps_native_to_unfold];
7 -> 42;
43 [color="0.18 0.6 0.85",
label=compose_warps_unfold_to_crop_native];
7 -> 43;
8 [color="0.23 0.6 0.85",
label=create_unfold_ref];
8 -> 7;
9 [color="0.14 0.6 0.85",
label=create_unfold_coord_map];
8 -> 9;
8 -> 42;
8 -> 43;
9 -> 7;
26 [color="0.51 0.6 0.85",
label=create_native_coord_ref];
26 -> 7;
}
subgraph cluster_3 {
graph [color=blue,
label=qc
];
45 [color="0.44 0.6 0.85",
label=qc_reg_to_template];
46 [color="0.16 0.6 0.85",
label=qc_subfield];
47 [color="0.41 0.6 0.85",
label=qc_subfield_surf];
}
subgraph cluster_8 {
graph [color=blue,
label=preproc_t2
];
}
subgraph cluster_6 {
graph [color=blue,
label=myelin_map
];
}
subgraph cluster_5 {
graph [color=blue,
label=autotop
];
10 [color="0.32 0.6 0.85",
label=laplace_coords_hipp];
24 [color="0.19 0.6 0.85",
label=equivolume_coords];
25 [color="0.40 0.6 0.85",
label=prep_equivolume_coords];
25 -> 24;
}
subgraph cluster_12 {
graph [color=blue,
label=nnunet
];
14 [color="0.24 0.6 0.85",
label=run_inference];
49 [color="0.12 0.6 0.85",
label=qc_nnunet_f3d];
14 -> 49;
48 [color="0.55 0.6 0.85",
label=qc_nnunet_dice];
49 -> 48;
}
subgraph cluster_7 {
graph [color=blue,
label=preproc_seg
];
}
subgraph cluster_9 {
graph [color=blue,
label=gifti
];
1 [color="0.10 0.6 0.85",
label=create_spec_file_hipp];
2 [color="0.39 0.6 0.85",
label=calculate_gyrification];
2 -> 1;
35 [color="0.61 0.6 0.85",
label=create_dscalar_metric_cifti];
2 -> 35;
3 [color="0.29 0.6 0.85",
label=calculate_surface_area];
3 -> 2;
4 [color="0.43 0.6 0.85",
label=warp_gii_to_native];
4 -> 1;
4 -> 3;
31 [color="0.61 0.6 0.85",
label=smooth_surface];
4 -> 31;
32 [color="0.18 0.6 0.85",
label=calculate_thickness_from_surface];
4 -> 32;
5 [color="0.39 0.6 0.85",
label=correct_nan_vertices];
5 -> 4;
6 [color="0.33 0.6 0.85",
label=warp_gii_unfold2native];
6 -> 5;
27 [color="0.07 0.6 0.85",
label=constrain_surf_to_bbox];
27 -> 6;
28 [color="0.11 0.6 0.85",
label=cp_template_to_unfold];
28 -> 1;
28 -> 27;
30 [color="0.30 0.6 0.85",
label=calculate_curvature_from_surface];
30 -> 1;
30 -> 35;
31 -> 30;
32 -> 1;
32 -> 35;
33 [color="0.62 0.6 0.85",
label=nii_to_label_gii];
33 -> 1;
34 [color="0.15 0.6 0.85",
label=resample_atlas_to_refvol];
34 -> 33;
35 -> 1;
}
subgraph cluster_13 {
graph [color=blue,
label=resample_final_to_crop_native
];
36 [color="0.56 0.6 0.85",
label=resample_subfields_native_crop];
39 [color="0.59 0.6 0.85",
label=create_native_crop_ref];
39 -> 36;
41 [color="0.27 0.6 0.85",
label=resample_coords_native_crop];
39 -> 41;
44 [color="0.28 0.6 0.85",
label=resample_native_to_crop];
39 -> 44;
}
subgraph cluster_10 {
graph [color=blue,
label=shape_inject
];
11 [color="0.13 0.6 0.85",
label=reinsert_subject_labels];
12 [color="0.66 0.6 0.85",
label=template_shape_inject];
12 -> 11;
13 [color="0.42 0.6 0.85",
label=import_template_shape];
13 -> 12;
22 [color="0.02 0.6 0.85",
label=prep_segs_for_greedy];
13 -> 22;
21 [color="0.25 0.6 0.85",
label=template_shape_reg];
21 -> 12;
23 [color="0.04 0.6 0.85",
label=inject_init_laplace_coords];
21 -> 23;
22 -> 21;
}
subgraph cluster_11 {
graph [color=blue,
label=subfields
];
37 [color="0.32 0.6 0.85",
label=combine_tissue_subfield_labels_corobl];
40 [color="0.46 0.6 0.85",
label=resample_subfields_to_native];
37 -> 40;
38 [color="0.04 0.6 0.85",
label=label_subfields_from_vol_coords_corobl];
38 -> 37;
}
subgraph cluster_14 {
graph [color=blue,
label=common
];
}
0 [color="0.50 0.6 0.85",
label=all];
1 -> 0;
4 -> 47;
7 -> 6;
8 -> 0;
8 -> 27;
8 -> 34;
10 -> 7;
10 -> 26;
10 -> 38;
10 -> 41;
11 -> 10;
11 -> 25;
11 -> 37;
14 -> 11;
14 -> 12;
14 -> 22;
14 -> 23;
15 -> 14;
15 -> 49;
16 -> 40;
16 -> 44;
18 -> 36;
18 -> 40;
18 -> 41;
18 -> 42;
18 -> 43;
20 -> 45;
23 -> 10;
24 -> 7;
24 -> 38;
24 -> 41;
29 -> 4;
34 -> 38;
36 -> 0;
36 -> 46;
37 -> 36;
39 -> 43;
40 -> 39;
41 -> 0;
42 -> 0;
43 -> 0;
44 -> 0;
44 -> 46;
45 -> 0;
46 -> 0;
47 -> 0;
48 -> 0;
}
