--- a +++ b/gen_unfold_template/config_dentate.yml @@ -0,0 +1,39 @@ + +hippunfold_dir: hippunfold_unfoldDG +in_cifti: results/sub-{subject}/surf/sub-{subject}_space-T1w_den-32k_label-dentate_gyrification.dscalar.nii +in_gifti: results/sub-{subject}/surf/sub-{subject}_hemi-{hemi}_space-T1w_den-32k_label-dentate_surfarea.shape.gii +out_root: results_dentate +out_final_root: unfold_template_dentate + +in_warp_unfold2corobl: /home/ROBARTS/alik/graham/scratch/HCPUR100_hippunfold/hippunfold_unfoldDG/work/sub-{subject}/seg/sub-{subject}_hemi-{hemi}_label-dentate_from-unfold_to-corobl_mode-surface_xfm.nii.gz + +num_bins: '100' + +in_surfarea: + dims: + - 254 + - 30 + start: + - 0.234375 + - 0.234375 + end: + - 39.765625 + - 4.765625 + +surf_to_io: + midthickness: 1.171875 + inner: 0.078125 + outer: 2.265625 + +targetareas: + - '2.3' + - '0.53' + - '0.15' + + #this is filled in by hand (since they are approximate) +density_to_area: + '2mm': '2.3' + '1mm': '0.53' + '0p5mm': '0.15' + +