a b/gen_unfold_template/README.md 

  1
  
This workflow generates a set of custom density unfolded templates, with adaptive spacing designed to result in (mostly) constant surface area when transformed to native space





  
  

  2
  





  
  

  3
  





  
  

  4
  





  
  

  5
  
Requirements:





  
  

  6
  
  - https://github.com/gllmflndn/gifti (clone into this folder)





  
  

  7
  
  - matlab





  
  

  8
  
  - hippunfold with uniform template run on a set of subjects





  
  

  9
  
    - here we used HCP UR100, and hippunfold unfoldDG branch





  
  

  10
  
    - it uses this to create an average surface area (gyrification) map





  
  

  11
  





  
  

  12
  
To run for hipp surf:





  
  

  13
  
```





  
  

  14
  
snakemake -np --configfile config_dentate.yml





  
  

  15
  
```





  
  

  16
  





  
  

  17
  
To run for dentate surf:





  
  

  18
  
```





  
  

  19
  
snakemake -np --configfile config_dentate.yml





  
  

  20
  
```