---
name: Generate DAG visualizations
on:
workflow_dispatch:
inputs:
comments:
description: "Comments"
jobs:
generate_dag:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: ["3.9"]
steps:
- name: Print author
run: |
echo "Author: ${{ github.triggering_actor }}"
echo "Comments: ${{ github.event.inputs.comments }}"
- name: Checkout main branch
uses: actions/checkout@v3
with:
ref: refs/heads/master
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install non-python dependencies
run: |
sudo apt-get install -y graphviz-dev graphviz
- name: Install dependencies
run: |
python -m pip install --upgrade pip
python -m pip install snakebids
- name: Set-up env for hippunfold
run: |
echo "HIPPUNFOLD_CACHE_DIR=`pwd`/test_data/fake_models" >> $GITHUB_ENV
echo "HIPPUNFOLD=./hippunfold/run.py" >> $GITHUB_ENV
- name: Generate rulegraph single T2w bids
run: |
$HIPPUNFOLD test_data/bids_singleT2w test_out participant -np --modality T2w --rulegraph | dot -Tsvg > docs/images/rulegraph_T2w.svg
- name: Commit updates
run: |
git config --local user.email "41898282+github-actions[bot]@users.noreply.github.com"
git config --local user.name "github-actions[bot]"
git diff-index --quiet HEAD || git add docs/images || commit -m "Add updated dags [skip ci]"
- name: Push changes
uses: ad-m/github-push-action@v0.8.0
with:
github_token: ${{ secrets.GITHUB_TOKEN }}