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| a | b/.dryrun_test_all.sh | ||
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| 1 | #!/bin/bash |
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| 2 | set -euxo pipefail |
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| 3 | HIPPUNFOLD_CACHE_DIR=`pwd`/test_data/fake_models |
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| 4 | hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w |
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| 5 | hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w --hemi R |
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| 6 | hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w --hemi L |
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| 7 | hippunfold test_data/bids_multiT2w test_out participant -np --modality T2w |
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| 8 | hippunfold test_data/bids_T1w test_out participant -np --modality T1w |
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| 9 | hippunfold test_data/bids_hippb500 test_out participant -np --modality hippb500 |
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| 10 | hippunfold test_data/bids_T1w_longitudinal test_out participant -np --modality T1w |
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| 11 | hippunfold test_data/bids_singleT2w_longitudinal test_out participant -np --modality T2w |
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| 12 | hippunfold test_data/bids_segT2w test_out participant -np --modality segT2w |
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| 13 | hippunfold . test_out participant -np --modality cropseg --path_cropseg test_data/data_cropseg/sub-{subject}_hemi-{hemi}_dseg.nii.gz |
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| 14 | hippunfold . test_out participant -np --modality cropseg --path_cropseg test_data/data_cropseg_1hemi/sub-{subject}_hemi-{hemi}_dseg.nii.gz --hemi L |
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| 15 | hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w --t1_reg_template |
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| 16 | hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w --output_space T1w |
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| 17 | hippunfold test_data/bids_T1w test_out participant -np --modality T1w --use-template-seg |