--- a +++ b/.dryrun_test_all.sh @@ -0,0 +1,17 @@ +#!/bin/bash +set -euxo pipefail +HIPPUNFOLD_CACHE_DIR=`pwd`/test_data/fake_models +hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w +hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w --hemi R +hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w --hemi L +hippunfold test_data/bids_multiT2w test_out participant -np --modality T2w +hippunfold test_data/bids_T1w test_out participant -np --modality T1w +hippunfold test_data/bids_hippb500 test_out participant -np --modality hippb500 +hippunfold test_data/bids_T1w_longitudinal test_out participant -np --modality T1w +hippunfold test_data/bids_singleT2w_longitudinal test_out participant -np --modality T2w +hippunfold test_data/bids_segT2w test_out participant -np --modality segT2w +hippunfold . test_out participant -np --modality cropseg --path_cropseg test_data/data_cropseg/sub-{subject}_hemi-{hemi}_dseg.nii.gz +hippunfold . test_out participant -np --modality cropseg --path_cropseg test_data/data_cropseg_1hemi/sub-{subject}_hemi-{hemi}_dseg.nii.gz --hemi L +hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w --t1_reg_template +hippunfold test_data/bids_singleT2w test_out participant -np --modality T2w --output_space T1w +hippunfold test_data/bids_T1w test_out participant -np --modality T1w --use-template-seg