[26e314]: / side_analysis / main_analyse_single_file.py

Download this file

18 lines (12 with data), 399 Bytes

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
__author__ = 'adeb'
import matplotlib
matplotlib.use('Agg')
import nibabel as nib
import numpy as np
from spynet.utils.utilities import analyse_classes
if __name__ == '__main__':
nib.nifti1.FLOAT32_EPS_3 = -1e-6
lab_file = "./datasets/miccai/1000_3.nii"
lab = nib.load(lab_file).get_data().squeeze()
lab = np.asarray(lab, dtype=np.int16)
analyse_classes(lab[lab.nonzero()])