max_organ_title: 4
mode: "ensemble addition"
svd_inf: "saved_inference"
svd_figs: "saved_figs"
youngest_child: "ITKSNAP_DCM_NIFTI"
dicom_ext: "dcm"
pred_vol: "pred_vol.nii"
dicom_vol: "dicom_vol.nii"
combined_folder: "multiorgan_ensemble"
combined_pred_filename: "comb_pred_vol.nii"
add_organ_color:
  kidney_add: 2
  liver_add: 4
  spleen_add: 8 
add_overlap:
  kidney_liver: 6
  kidney_spleen: 10
  liver_spleen: 12
  kidney_liver_spleen: 14
overlap_recolor:
  adjudicate_kidney_liver: 2
  adjudicate_kidney_spleen: 2
  adjudicate_liver_spleen: 8
  adjudicate_kidney_liver_spleen: 8
orig_color: 
  spleen_addition_color: 8 # See discussion in Readme
view_color: 
  spleen_viewer_color: 3 # Desired ITK-SNAP color. See in Readme
organ_name: ["kidney", "liver", "spleen"]
inference_ensemble_color: [2, 4, 3]
kidney_side: "right"
kidney_addition_color: 2
right_kidney_viewer_color: 1
model_dir: # Key structure: [sequence][orientation]
  T2:
    Axial:
      - "checkpoints/ax_T2_kidney_model.yml"
      - "checkpoints/ax_T2_liver_model.yml"
      - "checkpoints/ax_T2_spleen_model.yml"