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b/adpkd_segmentation/datasets/masks.py |
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import numpy as np |
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BACKGROUND = 0.0 |
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L_KIDNEY = 0.5019608 |
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R_KIDNEY = 0.7490196 |
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BACKGROUND_INT = 0 |
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L_KIDNEY_INT = 128 |
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R_KIDNEY_INT = 191 |
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class SingleChannelMaskNumpy: |
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"""Sets 1 for kidneys, 0 otherwise.""" |
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def __call__(self, label): |
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""" |
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Args: |
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label, (1, H, W) uint8 numpy array |
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Returns: |
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numpy array, (1, H, W) uint8 one-hot encoded mask |
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""" |
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kidney = np.bitwise_or(label == R_KIDNEY_INT, label == L_KIDNEY_INT) |
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return kidney.astype(np.uint8) |
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class TwoChannelsMaskNumpy: |
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""" |
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The first channel for right kidney vs background, |
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and the second one for left kidney vs background. |
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Kidneys are marked as 1, background as 0. |
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""" |
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def __call__(self, label): |
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""" |
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Args: |
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label, (1, H, W) uint8 numpy array |
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Returns: |
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numpy array, (2, H, W) uint8 one-hot encoded mask |
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""" |
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r_kidney = label == R_KIDNEY_INT |
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l_kidney = label == L_KIDNEY_INT |
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mask = np.concatenate([r_kidney, l_kidney], axis=0).astype(np.uint8) |
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return mask |
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class ThreeChannelMaskNumpy: |
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"""One channel for each of the 3 classes. Background last.""" |
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def __call__(self, label): |
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""" |
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Args: |
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label, (1, H, W) float32 tensor |
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Returns: |
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numpy array, (3, H, W) uint8 one-hot encoded mask |
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""" |
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background = label == BACKGROUND_INT |
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r_kidney = label == R_KIDNEY_INT |
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l_kidney = label == L_KIDNEY_INT |
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mask = np.concatenate([r_kidney, l_kidney, background], axis=0).astype( |
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np.uint8 |
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) |
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return mask |