--- a +++ b/environment.yml @@ -0,0 +1,293 @@ +name: medi +channels: + - pytorch + - plotly + - nvidia + - conda-forge + - defaults +dependencies: + - _libgcc_mutex=0.1=conda_forge + - _openmp_mutex=4.5=2_gnu + - absl-py=1.3.0=py38h06a4308_0 + - anyio=3.5.0=py38h06a4308_0 + - argon2-cffi=21.3.0=pyhd3eb1b0_0 + - argon2-cffi-bindings=21.2.0=py38h7f8727e_0 + - asttokens=2.0.5=pyhd3eb1b0_0 + - attrs=22.1.0=py38h06a4308_0 + - babel=2.11.0=py38h06a4308_0 + - backcall=0.2.0=pyhd3eb1b0_0 + - backports=1.1=pyhd3eb1b0_0 + - backports.functools_lru_cache=1.6.4=pyhd3eb1b0_0 + - beautifulsoup4=4.11.1=py38h06a4308_0 + - blas=1.0=mkl + - bleach=4.1.0=pyhd3eb1b0_0 + - brotli=1.0.9=h5eee18b_7 + - brotli-bin=1.0.9=h5eee18b_7 + - brotlipy=0.7.0=py38h27cfd23_1003 + - bzip2=1.0.8=h7b6447c_0 + - ca-certificates=2023.01.10=h06a4308_0 + - certifi=2022.12.7=py38h06a4308_0 + - cffi=1.15.1=py38h74dc2b5_0 + - charset-normalizer=2.0.4=pyhd3eb1b0_0 + - click=8.0.4=py38h06a4308_0 + - cloudpickle=2.0.0=pyhd3eb1b0_0 + - comm=0.1.2=py38h06a4308_0 + - contourpy=1.0.5=py38hdb19cb5_0 + - cryptography=38.0.4=py38h9ce1e76_0 + - cuda=11.6.1=0 + - cuda-cccl=11.6.55=hf6102b2_0 + - cuda-command-line-tools=11.6.2=0 + - cuda-compiler=11.6.2=0 + - cuda-cudart=11.6.55=he381448_0 + - cuda-cudart-dev=11.6.55=h42ad0f4_0 + - cuda-cuobjdump=11.6.124=h2eeebcb_0 + - cuda-cupti=11.6.124=h86345e5_0 + - cuda-cuxxfilt=11.6.124=hecbf4f6_0 + - cuda-driver-dev=11.6.55=0 + - cuda-gdb=12.0.140=0 + - cuda-libraries=11.6.1=0 + - cuda-libraries-dev=11.6.1=0 + - cuda-memcheck=11.8.86=0 + - cuda-nsight=12.0.140=0 + - cuda-nsight-compute=12.0.1=0 + - cuda-nvcc=11.6.124=hbba6d2d_0 + - cuda-nvdisasm=12.0.140=0 + - cuda-nvml-dev=11.6.55=haa9ef22_0 + - cuda-nvprof=12.0.146=0 + - cuda-nvprune=11.6.124=he22ec0a_0 + - cuda-nvrtc=11.6.124=h020bade_0 + - cuda-nvrtc-dev=11.6.124=h249d397_0 + - cuda-nvtx=11.6.124=h0630a44_0 + - cuda-nvvp=12.0.146=0 + - cuda-runtime=11.6.1=0 + - cuda-samples=11.6.101=h8efea70_0 + - cuda-sanitizer-api=12.0.140=0 + - cuda-toolkit=11.6.1=0 + - cuda-tools=11.6.1=0 + - cuda-visual-tools=11.6.1=0 + - cudatoolkit=11.3.1=h2bc3f7f_2 + - cycler=0.11.0=pyhd3eb1b0_0 + - debugpy=1.5.1=py38h295c915_0 + - decorator=5.1.1=pyhd3eb1b0_0 + - defusedxml=0.7.1=pyhd3eb1b0_0 + - dm-tree=0.1.7=py38h6a678d5_1 + - entrypoints=0.4=py38h06a4308_0 + - executing=0.8.3=pyhd3eb1b0_0 + - ffmpeg=4.2.2=h20bf706_0 + - fftw=3.3.9=h27cfd23_1 + - filelock=3.9.0=py38h06a4308_0 + - flit-core=3.6.0=pyhd3eb1b0_0 + - freetype=2.11.0=h70c0345_0 + - future=0.18.2=py38_1 + - gast=0.5.3=pyhd3eb1b0_0 + - gds-tools=1.5.1.14=0 + - giflib=5.2.1=h5eee18b_1 + - gmp=6.2.1=h295c915_3 + - gnutls=3.6.15=he1e5248_0 + - huggingface_hub=0.10.1=py38h06a4308_0 + - icu=58.2=he6710b0_3 + - idna=3.4=py38h06a4308_0 + - importlib_metadata=4.11.3=hd3eb1b0_0 + - importlib_resources=5.2.0=pyhd3eb1b0_1 + - intel-openmp=2021.4.0=h06a4308_3561 + - ipykernel=6.19.2=py38hb070fc8_0 + - ipython=8.10.0=py38h06a4308_0 + - ipython_genutils=0.2.0=pyhd3eb1b0_1 + - ipywidgets=7.6.5=pyhd3eb1b0_1 + - jedi=0.18.1=py38h06a4308_1 + - jinja2=3.1.2=py38h06a4308_0 + - jpeg=9e=h7f8727e_0 + - json5=0.9.6=pyhd3eb1b0_0 + - jsonschema=4.17.3=py38h06a4308_0 + - jupyter_client=7.4.9=py38h06a4308_0 + - jupyter_core=5.2.0=py38h06a4308_0 + - jupyter_server=1.23.4=py38h06a4308_0 + - jupyterlab=3.5.3=py38h06a4308_0 + - jupyterlab_pygments=0.1.2=py_0 + - jupyterlab_server=2.16.5=py38h06a4308_0 + - jupyterlab_widgets=1.0.0=pyhd3eb1b0_1 + - kiwisolver=1.4.4=py38h6a678d5_0 + - lame=3.100=h7b6447c_0 + - lcms2=2.12=h3be6417_0 + - ld_impl_linux-64=2.38=h1181459_1 + - lerc=3.0=h295c915_0 + - libbrotlicommon=1.0.9=h5eee18b_7 + - libbrotlidec=1.0.9=h5eee18b_7 + - libbrotlienc=1.0.9=h5eee18b_7 + - libcublas=11.9.2.110=h5e84587_0 + - libcublas-dev=11.9.2.110=h5c901ab_0 + - libcufft=10.7.1.112=hf425ae0_0 + - libcufft-dev=10.7.1.112=ha5ce4c0_0 + - libcufile=1.5.1.14=0 + - libcufile-dev=1.5.1.14=0 + - libcurand=10.3.1.124=0 + - libcurand-dev=10.3.1.124=0 + - libcusolver=11.3.4.124=h33c3c4e_0 + - libcusparse=11.7.2.124=h7538f96_0 + - libcusparse-dev=11.7.2.124=hbbe9722_0 + - libdeflate=1.8=h7f8727e_5 + - libffi=3.3=he6710b0_2 + - libgcc-ng=12.1.0=h8d9b700_16 + - libgfortran-ng=11.2.0=h00389a5_1 + - libgfortran5=11.2.0=h1234567_1 + - libgomp=12.1.0=h8d9b700_16 + - libiconv=1.16=h7f8727e_2 + - libidn2=2.3.2=h7f8727e_0 + - libnpp=11.6.3.124=hd2722f0_0 + - libnpp-dev=11.6.3.124=h3c42840_0 + - libnsl=2.0.0=h5eee18b_0 + - libnvjpeg=11.6.2.124=hd473ad6_0 + - libnvjpeg-dev=11.6.2.124=hb5906b9_0 + - libopus=1.3.1=h7b6447c_0 + - libpng=1.6.37=hbc83047_0 + - libprotobuf=3.20.1=h4ff587b_0 + - libsodium=1.0.18=h7b6447c_0 + - libsqlite=3.39.2=h753d276_1 + - libstdcxx-ng=11.2.0=h1234567_1 + - libtasn1=4.16.0=h27cfd23_0 + - libtiff=4.4.0=hecacb30_0 + - libunistring=0.9.10=h27cfd23_0 + - libuuid=1.41.5=h5eee18b_0 + - libvpx=1.7.0=h439df22_0 + - libwebp=1.2.4=h11a3e52_0 + - libwebp-base=1.2.4=h5eee18b_0 + - libxml2=2.9.14=h74e7548_0 + - libxslt=1.1.35=h4e12654_0 + - libzlib=1.2.12=h166bdaf_2 + - lxml=4.9.1=py38h1edc446_0 + - lz4-c=1.9.4=h6a678d5_0 + - markupsafe=2.1.1=py38h7f8727e_0 + - matplotlib-base=3.6.2=py38h945d387_0 + - matplotlib-inline=0.1.6=py38h06a4308_0 + - mistune=2.0.4=py38h06a4308_0 + - mkl=2021.4.0=h06a4308_640 + - mkl-service=2.4.0=py38h7f8727e_0 + - mkl_fft=1.3.1=py38hd3c417c_0 + - mkl_random=1.2.2=py38h51133e4_0 + - mnist=0.2.2=py_0 + - munkres=1.1.4=py_0 + - nbclassic=0.4.8=py38h06a4308_0 + - nbclient=0.5.13=py38h06a4308_0 + - nbconvert=7.0.0=pyhd8ed1ab_0 + - nbconvert-core=7.0.0=pyhd8ed1ab_0 + - nbconvert-pandoc=7.0.0=pyhd8ed1ab_0 + - nbformat=5.7.0=py38h06a4308_0 + - ncurses=6.4=h6a678d5_0 + - nest-asyncio=1.5.6=py38h06a4308_0 + - nettle=3.7.3=hbbd107a_1 + - ninja=1.10.2=h06a4308_5 + - ninja-base=1.10.2=hd09550d_5 + - nltk=3.7=pyhd3eb1b0_0 + - nose=1.3.7=pyhd3eb1b0_1008 + - notebook=6.5.2=py38h06a4308_0 + - notebook-shim=0.2.2=py38h06a4308_0 + - nsight-compute=2022.4.1.6=0 + - openh264=2.1.1=h4ff587b_0 + - openssl=1.1.1t=h7f8727e_0 + - packaging=22.0=py38h06a4308_0 + - pandoc=2.12=h06a4308_1 + - pandocfilters=1.5.0=pyhd3eb1b0_0 + - parso=0.8.3=pyhd3eb1b0_0 + - pexpect=4.8.0=pyhd3eb1b0_3 + - pickleshare=0.7.5=pyhd3eb1b0_1003 + - pip=22.3.1=py38h06a4308_0 + - pkgutil-resolve-name=1.3.10=py38h06a4308_0 + - platformdirs=2.5.2=py38h06a4308_0 + - plotly=5.13.1=py_0 + - pooch=1.4.0=pyhd3eb1b0_0 + - prometheus_client=0.14.1=py38h06a4308_0 + - prompt-toolkit=3.0.36=py38h06a4308_0 + - psutil=5.9.0=py38h5eee18b_0 + - ptyprocess=0.7.0=pyhd3eb1b0_2 + - pure_eval=0.2.2=pyhd3eb1b0_0 + - pycodestyle=2.10.0=py38h06a4308_0 + - pycparser=2.21=pyhd3eb1b0_0 + - pygments=2.11.2=pyhd3eb1b0_0 + - pyopenssl=22.0.0=pyhd3eb1b0_0 + - pyparsing=3.0.9=py38h06a4308_0 + - pyrsistent=0.18.0=py38heee7806_0 + - pysocks=1.7.1=py38h06a4308_0 + - python=3.8.13=haa1d7c7_1 + - python-dateutil=2.8.2=pyhd3eb1b0_0 + - python-fastjsonschema=2.16.2=py38h06a4308_0 + - python_abi=3.8=2_cp38 + - pytorch=1.13.1=py3.8_cuda11.6_cudnn8.3.2_0 + - pytorch-cuda=11.6=h867d48c_1 + - pytorch-mutex=1.0=cuda + - pytz=2022.7=py38h06a4308_0 + - pyyaml=6.0=py38h5eee18b_1 + - pyzmq=23.2.0=py38h6a678d5_0 + - readline=8.2=h5eee18b_0 + - regex=2022.7.9=py38h5eee18b_0 + - requests=2.28.1=py38h06a4308_0 + - send2trash=1.8.0=pyhd3eb1b0_1 + - six=1.16.0=pyhd3eb1b0_1 + - sniffio=1.2.0=py38h06a4308_1 + - soupsieve=2.3.2.post1=py38h06a4308_0 + - sqlite=3.39.3=h5082296_0 + - stack_data=0.2.0=pyhd3eb1b0_0 + - tenacity=8.0.1=py38h06a4308_1 + - tensorflow-probability=0.14.0=pyhd3eb1b0_0 + - terminado=0.17.1=py38h06a4308_0 + - timm=0.6.12=pyhd8ed1ab_0 + - tinycss2=1.2.1=py38h06a4308_0 + - tk=8.6.12=h1ccaba5_0 + - tomli=2.0.1=py38h06a4308_0 + - torchaudio=0.13.1=py38_cu116 + - torchvision=0.14.1=py38_cu116 + - tornado=6.2=py38h5eee18b_0 + - traitlets=5.7.1=py38h06a4308_0 + - typing-extensions=4.4.0=py38h06a4308_0 + - typing_extensions=4.4.0=py38h06a4308_0 + - urllib3=1.26.14=py38h06a4308_0 + - wcwidth=0.2.5=pyhd3eb1b0_0 + - webencodings=0.5.1=py38_1 + - websocket-client=0.58.0=py38h06a4308_4 + - wheel=0.38.4=py38h06a4308_0 + - widgetsnbextension=3.5.2=py38h06a4308_0 + - x264=1!157.20191217=h7b6447c_0 + - xz=5.2.10=h5eee18b_1 + - yaml=0.2.5=h7b6447c_0 + - zeromq=4.3.4=h2531618_0 + - zlib=1.2.12=h7f8727e_2 + - zstd=1.5.2=ha4553b6_0 + - pip: + - appdirs==1.4.4 + - brewer2mpl==1.4.1 + - fonttools==4.37.1 + - h5py==3.7.0 + - imageio==2.21.1 + - importlib-metadata==6.1.0 + - joblib==1.2.0 + - jupyter-http-over-ws==0.0.8 + - llvmlite==0.39.1 + - lock==2018.3.25.2110 + - matplotlib==3.5.3 + - networkx==2.8.6 + - numba==0.56.4 + - numpy==1.23.2 + - opencv-python==4.7.0.68 + - pandas==1.5.3 + - patsy==0.5.3 + - phasepack==1.5 + - pillow==9.2.0 + - pillow-simd==9.0.0.post1 + - pyfftw==0.13.1 + - pynndescent==0.5.8 + - pywavelets==1.3.0 + - scikit-image==0.19.3 + - scikit-learn==1.2.2 + - scipy==1.10.1 + - seaborn==0.11.2 + - setuptools==67.6.1 + - statsmodels==0.14.0 + - text-unidecode==1.3 + - threadpoolctl==3.1.0 + - tifffile==2022.8.12 + - torch-summary==1.4.5 + - torchattacks==3.3.0 + - torchinfo==1.7.2 + - tqdm==4.65.0 + - tzdata==2023.3 + - umap-learn==0.5.3 + - zipp==3.15.0