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<meta property="og:description" content="This is a class that creates an RCDM using an extracted RDS file. |
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Parallel processing is supported only in the current Occurrence table, |
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and it is recommended that the image table not be processed in parallel |
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because of the computer science problem that the number of images in the image table does not match. |
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Even if you set Pararell through the constructor, it is not supported by the Image method." /> |
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<h1>RadDB Class</h1> |
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<div class="hidden name"><code>RadDB.Rd</code></div> |
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<div class="ref-description"> |
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<p>This is a class that creates an RCDM using an extracted RDS file. |
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Parallel processing is supported only in the current Occurrence table, |
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and it is recommended that the image table not be processed in parallel |
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because of the computer science problem that the number of images in the image table does not match. |
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Even if you set Pararell through the constructor, it is not supported by the Image method.</p> |
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</div> |
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<pre class="usage"><span class='no'>RadDB</span></pre> |
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<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2> |
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<table class="ref-arguments"> |
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<colgroup><col class="name" /><col class="desc" /></colgroup> |
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<tr> |
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<th>core</th> |
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<td><p>Number of cores to use</p></td> |
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</tr> |
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</table> |
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<h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2> |
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<p>An object of class <code>R6ClassGenerator</code> of length 24.</p> |
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<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2> |
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<div class='dont-index'><p>https://github.com/OHDSI/Radiology-CDM/wiki</p></div> |
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<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> |
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<pre class="examples"><span class='co'># NOT RUN {</span> |
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<span class='co'>############################# Example Code: Convert Radiology CDM ###################################</span> |
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<span class='co'># Create Radiology_Occurrence table for rds Path</span> |
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<span class='no'>rdsPath</span> <span class='kw'><-</span> <span class='st'>"~/Radiology/rds_test"</span> |
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<span class='co'># Create RadDB object,,</span> |
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<span class='co'># If using pararell, require pararell package</span> |
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<span class='no'>RDB</span> <span class='kw'><-</span> <span class='no'>RadDB</span>$<span class='fu'>new</span>(<span class='kw'>core</span> <span class='kw'>=</span> <span class='kw pkg'>parallel</span><span class='kw ns'>::</span><span class='fu'><a href='https://www.rdocumentation.org/packages/parallel/topics/detectCores'>detectCores</a></span>() - <span class='fl'>1</span>) |
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<span class='co'># Get Radiology_Occurrence table</span> |
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<span class='no'>occur</span> <span class='kw'><-</span> <span class='no'>RDB</span>$<span class='fu'>createRadiologyOccurrence</span>(<span class='kw'>path</span> <span class='kw'>=</span> <span class='no'>rdsPath</span>) |
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<span class='co'># Create Radiology_Image table for read RDS file</span> |
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<span class='no'>rdsFile</span> <span class='kw'><-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/list.files'>list.files</a></span>(<span class='kw'>path</span> <span class='kw'>=</span> <span class='no'>rdsPath</span>, <span class='kw'>pattern</span> <span class='kw'>=</span> <span class='st'>"\\.rds$"</span>, <span class='kw'>full.names</span> <span class='kw'>=</span> <span class='no'>T</span>, <span class='kw'>recursive</span> <span class='kw'>=</span> <span class='no'>T</span>) |
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<span class='no'>data</span> <span class='kw'><-</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/readRDS'>readRDS</a></span>(<span class='kw'>file</span> <span class='kw'>=</span> <span class='no'>rdsFile</span>[<span class='fl'>2</span>]) |
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<span class='co'># Get Radiology_Image table</span> |
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<span class='no'>img</span> <span class='kw'><-</span> <span class='no'>RDB</span>$<span class='fu'>createRadiologyImage</span>(<span class='kw'>data</span> <span class='kw'>=</span> <span class='no'>data</span>) |
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<span class='co'># Detach core</span> |
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<span class='no'>RDB</span>$<span class='fu'>finalize</span>() |
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<span class='co'>######################################## Example Code: END ##########################################</span> |
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<span class='co'># }</span></pre> |
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</div> |
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<h2>Contents</h2> |
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<ul class="nav nav-pills nav-stacked"> |
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<li><a href="#arguments">Arguments</a></li> |
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<li><a href="#format">Format</a></li> |
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<li><a href="#see-also">See also</a></li> |
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<li><a href="#examples">Examples</a></li> |
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</ul> |
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<h2>Author</h2> |
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<p>Neon K.I.D</p> |
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